Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KEC54_RS12830 Genome accession   NZ_CP073633
Coordinates   2701619..2702182 (-) Length   187 a.a.
NCBI ID   WP_056119976.1    Uniprot ID   A0AAX3WNR2
Organism   Methylorubrum extorquens strain ATCC 55366     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2696619..2707182
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KEC54_RS12805 (KEC54_12650) - 2696757..2698859 (-) 2103 WP_283536188.1 TonB-dependent siderophore receptor -
  KEC54_RS12810 (KEC54_12655) panC 2699272..2700129 (-) 858 WP_056119986.1 pantoate--beta-alanine ligase -
  KEC54_RS12815 (KEC54_12660) - 2700205..2700564 (-) 360 WP_056119982.1 hypothetical protein -
  KEC54_RS12820 (KEC54_12665) - 2700637..2701242 (-) 606 WP_003603578.1 XRE family transcriptional regulator -
  KEC54_RS12825 (KEC54_12670) - 2701338..2701610 (+) 273 WP_283536189.1 hypothetical protein -
  KEC54_RS12830 (KEC54_12675) ssb 2701619..2702182 (-) 564 WP_056119976.1 single-stranded DNA-binding protein Machinery gene
  KEC54_RS12835 (KEC54_12680) - 2702417..2703433 (-) 1017 WP_056119973.1 NADP-dependent oxidoreductase -
  KEC54_RS12840 (KEC54_12685) - 2703526..2703933 (+) 408 WP_283536190.1 DUF4174 domain-containing protein -
  KEC54_RS12845 (KEC54_12690) - 2703986..2704525 (-) 540 WP_015822722.1 hypothetical protein -
  KEC54_RS12850 (KEC54_12695) - 2704752..2705528 (+) 777 WP_283536191.1 phosphodiester glycosidase family protein -
  KEC54_RS12855 (KEC54_12700) - 2705698..2706816 (-) 1119 WP_283536192.1 NADH:flavin oxidoreductase/NADH oxidase -

Sequence

Protein


Download         Length: 187 a.a.        Molecular weight: 19986.76 Da        Isoelectric Point: 6.0203

>NTDB_id=559549 KEC54_RS12830 WP_056119976.1 2701619..2702182(-) (ssb) [Methylorubrum extorquens strain ATCC 55366]
MAGSVNKVILVGNLGRDPETRRLSSGDPVVNLRIATSESWKDKASGERKEKTEWHSVVIYNDNLAKVAEQYLRKGSKVYI
EGQLQTRKWTDQSGAEKYTTEVVLQRFRGEMTILDGRGGGGGGDFAGEDEGGGQISRGGDRGGDRGGDRGGRDDYGSSRS
GGGGGDRRPSSGGGAKPNYDLDDDIPF

Nucleotide


Download         Length: 564 bp        

>NTDB_id=559549 KEC54_RS12830 WP_056119976.1 2701619..2702182(-) (ssb) [Methylorubrum extorquens strain ATCC 55366]
ATGGCGGGCAGCGTCAACAAGGTGATTCTGGTCGGCAATCTCGGGCGCGATCCCGAGACCCGGCGTCTGTCCTCGGGCGA
CCCCGTGGTGAACCTGCGCATCGCGACGTCGGAGTCCTGGAAGGACAAGGCGTCGGGCGAGCGCAAGGAAAAGACCGAGT
GGCACTCGGTCGTGATCTACAACGACAACCTCGCCAAGGTGGCGGAGCAGTATCTGCGCAAGGGCTCGAAGGTCTACATC
GAGGGCCAGCTTCAGACCCGCAAGTGGACCGACCAATCGGGCGCGGAGAAGTACACCACCGAAGTGGTGCTCCAGCGCTT
CCGCGGCGAGATGACGATTCTCGACGGCCGTGGCGGCGGCGGCGGCGGCGACTTCGCGGGCGAGGATGAGGGCGGCGGCC
AGATCAGCCGCGGCGGCGACCGGGGTGGTGATCGCGGCGGCGACCGCGGCGGGCGCGACGATTACGGCTCGAGCCGCTCC
GGTGGCGGTGGCGGCGATCGCCGGCCCTCCTCGGGCGGCGGCGCCAAGCCGAACTACGACCTCGACGACGACATTCCGTT
CTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

48.205

100

0.503
  ssb Vibrio cholerae strain A1552

49.18

97.861

0.481
  ssb Neisseria gonorrhoeae MS11

41.848

98.396

0.412
  ssb Neisseria meningitidis MC58

41.304

98.396

0.406