Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/celB   Type   Machinery gene
Locus tag   KEM15_RS03200 Genome accession   NZ_CP073632
Coordinates   615622..617307 (+) Length   561 a.a.
NCBI ID   WP_274504679.1    Uniprot ID   -
Organism   Streptococcus parasuis strain NN1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 610622..622307
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KEM15_RS03170 (KEM15_03130) - 611893..612299 (+) 407 Protein_584 GNAT family N-acetyltransferase -
  KEM15_RS03175 (KEM15_03135) - 612420..613031 (+) 612 WP_217374829.1 NAD(P)H-dependent oxidoreductase -
  KEM15_RS03180 (KEM15_03140) - 613049..613321 (-) 273 WP_217374830.1 GIY-YIG nuclease family protein -
  KEM15_RS03185 (KEM15_03145) - 613311..614060 (-) 750 WP_130554335.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  KEM15_RS03190 (KEM15_03150) - 614152..614895 (+) 744 WP_217374832.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  KEM15_RS03195 (KEM15_03155) - 614961..615638 (+) 678 WP_274504678.1 helix-hairpin-helix domain-containing protein -
  KEM15_RS03200 (KEM15_03160) comEC/celB 615622..617307 (+) 1686 WP_274504679.1 ComEC/Rec2 family competence protein Machinery gene
  KEM15_RS03205 - 618320..618589 (+) 270 WP_274504680.1 CpXC domain-containing protein -
  KEM15_RS03210 - 618640..618957 (+) 318 WP_274504681.1 hypothetical protein -
  KEM15_RS03215 (KEM15_03170) - 619073..620200 (+) 1128 WP_274504682.1 recombinase family protein -
  KEM15_RS03220 (KEM15_03175) - 620202..620627 (+) 426 WP_274504683.1 hypothetical protein -

Sequence

Protein


Download         Length: 561 a.a.        Molecular weight: 63785.41 Da        Isoelectric Point: 8.2338

>NTDB_id=559511 KEM15_RS03200 WP_274504679.1 615622..617307(+) (comEC/celB) [Streptococcus parasuis strain NN1]
MSRLIRLPCQPIHFAVLAVLAYFAVHSFSLLTMSLLSLLLAVFRLRQGKVVFIKTLPLLALCGLFFGCQKIQWERTNQWA
PEQVTTVQVIPDTIDVNGDSLSFRGRAEGQVFQVFYKVASQKEQTYFHELTDLVQLDVDAEVCQPAGQRNFNGFDYQAYL
KTQGIYRTVKISTINNILPVHSWNIFDWLSTWRRQALVYIKSHFPAPMSHYMTGLLLGELDSDFDQMSDLYSSLGIIHLF
ALSGMQVGFFIDKFRWLLLRLGLTKETVDKLQIPFSLIYAGLTGFSVSVVRSLVQKILGNLGLRKLDNFAATVFVCLLLM
PRFLLTAGGVLTFTYALLLTVFDFEELGQLKKIAVESLSISLGILPVLMTYFFAFQPLSILLTFVFSFVFDVLLLPGLSV
ILLLSPFIKITWVNGFFILMEKIIVWVAELGIRPWILGKPTGLVFLLLLFCLFLLYDFHREKKWLLGLSLILALLFFITK
HPLENEVTVVDVGQGDSIFLRDIRGRTVLIDVGGRVDFAAKEAWRERAREANAERTLIPYLHSRGVDRIDDLVLTHTEVI
V

Nucleotide


Download         Length: 1686 bp        

>NTDB_id=559511 KEM15_RS03200 WP_274504679.1 615622..617307(+) (comEC/celB) [Streptococcus parasuis strain NN1]
ATGTCACGGTTGATTAGACTCCCCTGTCAGCCCATTCACTTTGCAGTTTTGGCGGTGTTAGCCTACTTTGCCGTTCACTC
TTTTTCCCTTTTGACAATGAGCCTGCTGAGTCTGTTACTAGCAGTCTTTAGGCTTCGGCAAGGAAAGGTGGTCTTCATCA
AAACGCTACCGCTTCTAGCCTTATGTGGTCTCTTCTTCGGATGTCAGAAGATACAATGGGAGCGGACAAATCAATGGGCT
CCAGAGCAAGTGACAACTGTGCAGGTTATTCCTGATACCATTGATGTCAACGGAGACAGTCTATCTTTTCGTGGTCGGGC
TGAAGGTCAAGTTTTTCAGGTTTTCTATAAAGTTGCAAGTCAGAAAGAACAAACCTACTTTCATGAGCTTACGGACTTGG
TGCAGTTAGACGTAGATGCAGAAGTTTGCCAACCAGCAGGTCAACGTAATTTCAATGGTTTTGATTATCAGGCTTATCTC
AAAACCCAGGGCATCTATCGGACAGTAAAAATAAGTACCATTAACAATATTCTCCCTGTTCATTCTTGGAATATCTTTGA
CTGGTTGTCAACCTGGCGGAGGCAGGCTCTCGTTTATATCAAATCTCATTTTCCTGCTCCCATGAGCCACTACATGACTG
GATTACTATTGGGAGAGTTAGATAGTGACTTTGACCAAATGAGTGACCTCTATTCTAGTTTAGGGATCATTCATCTTTTT
GCCCTGTCTGGGATGCAGGTTGGTTTTTTCATTGACAAATTTCGCTGGCTTTTATTGCGTTTGGGTTTAACAAAGGAAAC
TGTCGATAAACTTCAAATTCCGTTTTCTCTTATTTATGCAGGATTAACAGGATTTTCAGTATCAGTCGTGCGGTCCTTGG
TCCAGAAAATTCTTGGTAATCTCGGGCTACGAAAATTGGATAATTTTGCAGCAACTGTCTTTGTTTGTCTCTTGCTTATG
CCACGTTTTCTTCTGACAGCAGGAGGTGTGCTGACATTTACCTATGCTTTGTTATTGACAGTCTTTGATTTTGAAGAGCT
AGGGCAGCTAAAAAAGATAGCAGTGGAGAGTCTGAGTATTTCTCTTGGGATTTTACCGGTCTTGATGACCTATTTTTTTG
CCTTTCAGCCCTTATCTATCCTTTTAACGTTTGTTTTTTCCTTTGTTTTTGATGTGTTGTTGTTACCTGGGCTATCTGTC
ATTCTTTTACTATCGCCCTTCATTAAAATTACGTGGGTCAACGGATTCTTTATCCTTATGGAAAAGATTATTGTATGGGT
GGCAGAATTGGGGATTCGACCTTGGATTTTAGGAAAACCTACGGGCCTTGTCTTTTTGCTCTTGCTGTTCTGCCTTTTCT
TGCTTTATGATTTTCACAGAGAGAAGAAATGGCTCCTTGGATTGAGTCTGATTCTTGCTCTGCTATTTTTCATAACCAAA
CACCCGCTGGAAAATGAGGTGACGGTGGTAGACGTAGGGCAGGGGGATAGTATCTTTTTGCGGGACATTCGGGGGCGGAC
GGTTCTGATTGATGTGGGTGGTCGGGTTGACTTTGCTGCAAAGGAAGCTTGGCGGGAGCGGGCTAGGGAAGCAAATGCGG
AGCGAACACTGATTCCTTACCTGCATAGTCGAGGTGTGGATCGGATTGATGATTTGGTTCTGACCCATACCGAAGTAATA
GTATAG

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(29-176)

Competence protein (Competence)

(215-458)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/celB Streptococcus mitis SK321

52.5

99.822

0.524
  comEC/celB Streptococcus mitis NCTC 12261

52.158

99.109

0.517
  comEC/celB Streptococcus pneumoniae TIGR4

51.978

99.109

0.515
  comEC/celB Streptococcus pneumoniae Rx1

51.439

99.109

0.51
  comEC/celB Streptococcus pneumoniae D39

51.439

99.109

0.51
  comEC/celB Streptococcus pneumoniae R6

51.439

99.109

0.51
  comEC Lactococcus lactis subsp. cremoris KW2

44.84

100

0.449