Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KDN34_RS15070 Genome accession   NZ_CP073587
Coordinates   3303347..3303994 (-) Length   215 a.a.
NCBI ID   WP_212594525.1    Uniprot ID   -
Organism   Shewanella yunxiaonensis strain FJAT-54481     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3298347..3308994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KDN34_RS15045 (KDN34_15045) ppa 3298470..3299003 (+) 534 WP_212594520.1 inorganic diphosphatase -
  KDN34_RS15050 (KDN34_15050) - 3299650..3300015 (+) 366 WP_212594521.1 hypothetical protein -
  KDN34_RS15055 (KDN34_15055) - 3300443..3301468 (-) 1026 WP_212594522.1 hypothetical protein -
  KDN34_RS15065 (KDN34_15065) - 3301620..3302225 (-) 606 WP_212594524.1 hypothetical protein -
  KDN34_RS15070 (KDN34_15070) ssb 3303347..3303994 (-) 648 WP_212594525.1 single-stranded DNA-binding protein Machinery gene
  KDN34_RS15075 (KDN34_15075) - 3304031..3305398 (-) 1368 WP_212594526.1 MFS transporter -
  KDN34_RS15080 (KDN34_15080) - 3305660..3306775 (-) 1116 WP_212594527.1 NADH:flavin oxidoreductase/NADH oxidase -
  KDN34_RS15085 (KDN34_15085) - 3306884..3307780 (+) 897 WP_212594528.1 LysR family transcriptional regulator -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 23822.19 Da        Isoelectric Point: 5.9132

>NTDB_id=559366 KDN34_RS15070 WP_212594525.1 3303347..3303994(-) (ssb) [Shewanella yunxiaonensis strain FJAT-54481]
MASRGVNKVILVGNLGQDPEVRYMPNGNAVANITVATSDTWKDQQGQQQERTEWHRVVIFGKLAEVAGEYLRKGSQVYLE
GRLQTRKWKDQSGQERYTTEIVVDMQGSMQMLGGRPQNQGGAPMQGGNMGGGNFGAPQGGNQYAAPQQQPQQQYAPQQAA
PAYQPQQNSGYAPNKPQSQQRPAPQPQQKPQQQPQQPQQNYTPDLDDGWDDDIPF

Nucleotide


Download         Length: 648 bp        

>NTDB_id=559366 KDN34_RS15070 WP_212594525.1 3303347..3303994(-) (ssb) [Shewanella yunxiaonensis strain FJAT-54481]
ATGGCCAGTCGTGGTGTTAATAAGGTAATTCTGGTGGGCAATCTGGGGCAGGACCCAGAGGTGCGCTATATGCCAAACGG
CAATGCTGTGGCAAATATCACCGTCGCGACCAGTGATACCTGGAAGGATCAGCAGGGACAACAGCAGGAACGCACCGAGT
GGCACCGTGTGGTAATTTTCGGCAAGCTGGCTGAAGTGGCAGGTGAATATCTGCGCAAAGGTTCTCAGGTTTATCTGGAA
GGCCGTTTGCAGACCCGTAAGTGGAAAGATCAGAGTGGTCAGGAGCGTTATACCACTGAGATCGTGGTCGATATGCAAGG
CAGCATGCAGATGCTCGGTGGTCGCCCACAGAATCAGGGTGGCGCACCAATGCAGGGTGGCAACATGGGCGGTGGTAATT
TTGGTGCACCTCAGGGTGGCAACCAGTACGCTGCACCACAACAGCAACCACAGCAGCAATATGCACCGCAGCAGGCTGCG
CCAGCTTATCAGCCACAGCAAAATAGTGGTTATGCGCCTAATAAGCCGCAGTCACAGCAGCGCCCAGCGCCGCAGCCGCA
GCAGAAACCACAACAGCAACCGCAGCAGCCACAACAGAACTACACTCCAGATCTGGATGATGGCTGGGATGATGATATCC
CGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

68.208

80.465

0.549
  ssb Glaesserella parasuis strain SC1401

46.083

100

0.465
  ssb Neisseria meningitidis MC58

46.19

97.674

0.451
  ssb Neisseria gonorrhoeae MS11

46.19

97.674

0.451