Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   KDC22_RS33135 Genome accession   NZ_CP073365
Coordinates   7692438..7692953 (-) Length   171 a.a.
NCBI ID   WP_173134671.1    Uniprot ID   -
Organism   Paenibacillus tritici strain PH55-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 7687438..7697953
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KDC22_RS33120 (KDC22_33120) - 7689348..7691309 (-) 1962 WP_211721697.1 DNA mismatch repair protein MutS -
  KDC22_RS33125 (KDC22_33125) - 7691775..7692017 (-) 243 WP_211721698.1 hypothetical protein -
  KDC22_RS33130 (KDC22_33130) rpsR 7692144..7692416 (-) 273 WP_036699837.1 30S ribosomal protein S18 -
  KDC22_RS33135 (KDC22_33135) ssbA 7692438..7692953 (-) 516 WP_173134671.1 single-stranded DNA-binding protein Machinery gene
  KDC22_RS33140 (KDC22_33140) rpsF 7693004..7693288 (-) 285 WP_036699842.1 30S ribosomal protein S6 -
  KDC22_RS33145 (KDC22_33145) - 7693536..7693733 (+) 198 WP_173134674.1 YjzC family protein -
  KDC22_RS33155 (KDC22_33155) - 7694273..7694485 (-) 213 WP_173134677.1 DUF951 domain-containing protein -
  KDC22_RS33160 (KDC22_33160) - 7694485..7695519 (-) 1035 WP_211721699.1 mechanosensitive ion channel domain-containing protein -
  KDC22_RS33165 (KDC22_33165) - 7695512..7695787 (-) 276 WP_211721700.1 DUF3343 domain-containing protein -
  KDC22_RS33170 (KDC22_33170) yyaC 7695988..7696596 (+) 609 WP_211721701.1 spore protease YyaC -
  KDC22_RS33175 (KDC22_33175) - 7696568..7697068 (-) 501 WP_173134690.1 DUF4446 family protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18606.43 Da        Isoelectric Point: 4.8280

>NTDB_id=559253 KDC22_RS33135 WP_173134671.1 7692438..7692953(-) (ssbA) [Paenibacillus tritici strain PH55-1]
MLNRIILIGRLTRDPELRYTPAGVAVTQFTLAVDRNFTGQNGEREADFIPVVTWRQLAETCANYLRKGRLAAVEGRIQVR
NYENNEGKRVYVTEVIADNVRFLESAQSREGGNASSGGSMPEEPALGGGGNGGNSARGNGNNNNFSRNNNTQDPFSGDGK
PIDISDDDLPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=559253 KDC22_RS33135 WP_173134671.1 7692438..7692953(-) (ssbA) [Paenibacillus tritici strain PH55-1]
TTGTTGAACCGTATCATTCTGATCGGTCGGTTGACCCGTGACCCGGAACTTCGTTATACTCCCGCTGGTGTTGCCGTAAC
GCAGTTTACGCTTGCCGTAGACCGCAACTTTACGGGCCAGAACGGTGAACGCGAAGCGGACTTTATCCCGGTAGTAACCT
GGAGACAGCTGGCTGAGACCTGTGCCAATTACTTGCGCAAAGGACGACTGGCAGCCGTAGAAGGACGCATCCAAGTACGG
AATTACGAGAATAACGAAGGCAAACGTGTATACGTTACTGAAGTTATTGCCGATAATGTCCGTTTCCTGGAATCCGCGCA
GAGCCGTGAAGGCGGAAATGCATCAAGTGGTGGAAGTATGCCTGAAGAGCCAGCCTTAGGTGGCGGCGGTAACGGTGGGA
ACAGTGCTCGCGGAAATGGAAATAACAATAATTTCTCGCGTAACAACAATACCCAAGATCCTTTTTCGGGCGATGGAAAA
CCGATCGATATATCGGACGATGATTTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.749

100

0.573
  ssb Latilactobacillus sakei subsp. sakei 23K

50.575

100

0.515