Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KDN44_RS21380 Genome accession   NZ_CP073360
Coordinates   4465983..4466519 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain EC11     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4460983..4471519
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KDN44_RS21360 soxR 4462711..4463175 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  KDN44_RS21365 soxS 4463261..4463584 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  KDN44_RS21370 pdeC 4463587..4465173 (-) 1587 WP_000019549.1 c-di-GMP phosphodiesterase PdeC -
  KDN44_RS21375 yjcB 4465603..4465884 (+) 282 WP_001341690.1 YjcB family protein -
  KDN44_RS21380 ssb 4465983..4466519 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  KDN44_RS21385 uvrA 4466773..4469595 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  KDN44_RS21390 yjbR 4469630..4469986 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  KDN44_RS21395 yjbQ 4469990..4470406 (-) 417 WP_023143127.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  KDN44_RS21400 aphA 4470517..4471230 (-) 714 WP_072649396.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=559219 KDN44_RS21380 WP_000168305.1 4465983..4466519(-) (ssb) [Escherichia coli strain EC11]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=559219 KDN44_RS21380 WP_000168305.1 4465983..4466519(-) (ssb) [Escherichia coli strain EC11]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGTAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489