Detailed information    

insolico Bioinformatically predicted

Overview

Name   ideA   Type   Regulator
Locus tag   KDW95_RS02955 Genome accession   NZ_CP073347
Coordinates   677466..678167 (+) Length   233 a.a.
NCBI ID   WP_255854769.1    Uniprot ID   -
Organism   Marinobacterium rhizophilum strain D13-1     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 672466..683167
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KDW95_RS02940 (KDW95_02945) - 673943..676423 (+) 2481 WP_255854766.1 cation:proton antiporter -
  KDW95_RS02945 (KDW95_02950) - 676486..676689 (-) 204 WP_255854767.1 hypothetical protein -
  KDW95_RS02950 (KDW95_02955) - 676960..677232 (-) 273 WP_255854768.1 hypothetical protein -
  KDW95_RS02955 (KDW95_02960) ideA 677466..678167 (+) 702 WP_255854769.1 endonuclease Regulator
  KDW95_RS02960 (KDW95_02965) - 678221..679189 (+) 969 WP_255854770.1 hypothetical protein -
  KDW95_RS02965 (KDW95_02970) - 679431..679913 (+) 483 WP_255854771.1 peptidylprolyl isomerase -
  KDW95_RS02970 (KDW95_02975) - 680154..682370 (+) 2217 WP_255854772.1 bifunctional diguanylate cyclase/phosphodiesterase -
  KDW95_RS02975 (KDW95_02980) - 682615..682908 (+) 294 WP_255854773.1 DUF6482 family protein -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26723.38 Da        Isoelectric Point: 8.4612

>NTDB_id=559115 KDW95_RS02955 WP_255854769.1 677466..678167(+) (ideA) [Marinobacterium rhizophilum strain D13-1]
MRMLWVALLVPLYTFAGPPVSFSAAKREMASIYADNPQSFYCGCRYAALGKRLEPDLASCGYTARKNANRAGRIEWEHVM
PAWVFGHQRQCWQQGGRRACSKDPEFKRMEADMNNLVPAIGEVNGDRSNYAYGMIAGESRAYGACDVEVDFKGRMLEPAD
GVRGDIARIYFYMRDRYQLRLSTSETRLLEAWHRTDPVDTWELERNRRIRTVQGFGNPHVEAEPDMLVRNRVP

Nucleotide


Download         Length: 702 bp        

>NTDB_id=559115 KDW95_RS02955 WP_255854769.1 677466..678167(+) (ideA) [Marinobacterium rhizophilum strain D13-1]
ATGCGTATGTTGTGGGTGGCACTGCTGGTGCCACTTTATACGTTTGCCGGCCCGCCGGTGTCTTTCAGTGCGGCCAAGCG
TGAAATGGCCTCGATCTATGCCGATAATCCACAGTCGTTTTACTGCGGGTGCCGCTACGCTGCACTGGGCAAGCGGCTAG
AGCCGGATCTGGCCAGTTGTGGCTATACCGCTCGCAAGAACGCTAACCGTGCCGGGCGTATCGAATGGGAACATGTGATG
CCGGCCTGGGTGTTCGGGCATCAGCGCCAGTGCTGGCAGCAGGGCGGGCGACGGGCGTGCAGCAAGGATCCCGAATTCAA
GCGCATGGAGGCCGACATGAACAACCTGGTGCCGGCCATTGGTGAAGTCAACGGTGATCGATCCAACTACGCTTACGGTA
TGATCGCCGGCGAATCGCGGGCCTATGGTGCCTGCGATGTCGAAGTGGACTTCAAGGGGCGCATGCTTGAGCCCGCCGAT
GGCGTGCGGGGTGATATTGCCCGCATCTACTTTTACATGCGGGATCGCTACCAGTTGCGCCTGAGTACAAGTGAGACGCG
GCTGCTGGAGGCCTGGCACCGGACCGATCCGGTCGATACCTGGGAGCTGGAACGCAACCGGCGGATTCGCACCGTTCAGG
GATTTGGCAATCCCCATGTTGAAGCCGAGCCGGATATGCTGGTCCGCAACCGGGTCCCCTGA

Domains

Predicted by InterproScan.

Endonuclease I (Endonuclease_1)

(27-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ideA Vibrio cholerae O1 str. 2010EL-1786

58.447

93.991

0.549
  dns Vibrio parahaemolyticus RIMD 2210633

55.556

96.567

0.536
  dns Vibrio cholerae strain A1552

54.839

93.133

0.511
  dns Aliivibrio fischeri ES114

54.128

93.562

0.506
  dns Campylobacter jejuni RM1221

39.912

97.854

0.391