Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   KDW96_RS16240 Genome accession   NZ_CP073346
Coordinates   3464956..3466293 (-) Length   445 a.a.
NCBI ID   WP_255837259.1    Uniprot ID   -
Organism   Pseudomonas benzenivorans strain D13-4     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3459956..3471293
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KDW96_RS16210 (KDW96_16155) - 3460664..3461149 (-) 486 WP_255837253.1 PilX N-terminal domain-containing pilus assembly protein -
  KDW96_RS16215 (KDW96_16160) - 3461146..3462153 (-) 1008 WP_255837254.1 PilW family protein -
  KDW96_RS16220 (KDW96_16165) pilV 3462150..3462587 (-) 438 WP_255837255.1 type IV pilus modification protein PilV -
  KDW96_RS16225 (KDW96_16170) - 3462614..3463129 (-) 516 WP_255837256.1 GspH/FimT family pseudopilin -
  KDW96_RS16230 (KDW96_16175) - 3463229..3463744 (-) 516 WP_255837257.1 GspH/FimT family pseudopilin -
  KDW96_RS16235 (KDW96_16180) thiO 3463810..3464919 (+) 1110 WP_255837258.1 glycine oxidase ThiO -
  KDW96_RS16240 (KDW96_16185) pilR 3464956..3466293 (-) 1338 WP_255837259.1 sigma-54 dependent transcriptional regulator Regulator
  KDW96_RS16245 (KDW96_16190) pilS 3466296..3467888 (-) 1593 WP_255837260.1 PAS domain-containing sensor histidine kinase Regulator
  KDW96_RS16250 (KDW96_16195) - 3467878..3468114 (-) 237 WP_255837261.1 PP0621 family protein -
  KDW96_RS16255 (KDW96_16200) - 3468291..3469922 (+) 1632 WP_255837262.1 NAD+ synthase -
  KDW96_RS16260 (KDW96_16205) - 3469998..3470987 (-) 990 WP_255837263.1 outer membrane protein assembly factor BamD -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49968.27 Da        Isoelectric Point: 5.6038

>NTDB_id=559107 KDW96_RS16240 WP_255837259.1 3464956..3466293(-) (pilR) [Pseudomonas benzenivorans strain D13-4]
MTRQIALIVDDEPDIRELLEITLGRMKLDTRSARNVKEAREWLAKEPFDLCLTDMRLPDGTGLELVQHIQQRHPQVPVAM
ITAYGSLDTAIHALKAGAFDFLTKPVDLGRLRELVATALRLRTQESAEQPVDSRLLGDSPPMQTLRKQILKLARSQAPVY
ISGESGSGKELVARLIHEQGPRNEQPFVPVNCGAIPSELMESEFFGHKKGSFTGAVEDKQGLFQAANGGTLFLDEVADLP
LAMQVKLLRAIQEKAIRTVGGQQEVTVDVRVLCATHKDLAAEVAAERFRQDLYYRLNVIELRVPPLRERREDIAKLAEVM
LRRLANDTGLDPARLDPEALEKLKNYRFPGNVRELENMLERAYTLCEDDRISASDLRLADAGPAGENGEASLAQIDNLED
HLEDIERKLIMQALEETRWNRTAAAQRLGLSFRSMRYRLKKLGID

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=559107 KDW96_RS16240 WP_255837259.1 3464956..3466293(-) (pilR) [Pseudomonas benzenivorans strain D13-4]
ATGACCCGCCAGATAGCCCTGATCGTCGATGACGAGCCCGATATCCGAGAACTGCTGGAGATCACCCTCGGCCGGATGAA
GCTCGACACCCGCAGCGCCCGCAACGTCAAGGAAGCGCGCGAATGGCTGGCCAAGGAACCGTTCGACCTTTGCCTGACCG
ACATGCGCCTGCCCGACGGCACCGGTCTGGAGCTGGTGCAGCACATTCAGCAGCGTCATCCCCAGGTGCCGGTAGCGATG
ATCACCGCCTACGGCAGCCTGGACACGGCGATCCACGCCCTCAAGGCCGGCGCCTTCGACTTCCTGACCAAGCCGGTCGA
CCTCGGCCGCCTGCGCGAACTGGTGGCCACCGCCCTGCGCCTGCGCACGCAAGAGAGCGCGGAGCAGCCGGTCGACAGCC
GCCTGCTCGGCGACTCGCCGCCAATGCAGACACTGCGCAAGCAGATCCTCAAGCTCGCCCGCAGCCAGGCGCCGGTGTAT
ATCAGCGGCGAATCCGGCAGCGGCAAGGAGCTGGTCGCCCGCCTCATCCACGAGCAGGGCCCGCGCAACGAGCAGCCGTT
CGTGCCGGTCAACTGTGGCGCCATTCCCTCGGAGCTGATGGAGAGCGAGTTCTTCGGCCACAAGAAAGGCAGCTTCACCG
GCGCCGTCGAGGACAAACAGGGCCTGTTCCAGGCAGCCAATGGCGGCACCCTGTTCCTCGACGAAGTCGCCGACCTGCCG
CTGGCCATGCAGGTCAAGCTGCTGCGGGCTATCCAGGAAAAGGCGATACGCACGGTCGGCGGCCAGCAGGAGGTGACGGT
CGATGTACGCGTCCTCTGCGCCACCCACAAGGACCTGGCCGCCGAAGTCGCCGCCGAGCGCTTCCGCCAGGACCTCTACT
ATCGCCTCAACGTCATCGAGCTGCGCGTGCCGCCCCTACGCGAACGCCGCGAGGACATCGCGAAGCTGGCCGAAGTGATG
CTCAGGCGCCTGGCCAACGACACCGGCCTGGACCCCGCCCGGCTCGACCCCGAGGCCCTGGAGAAGCTCAAGAACTACCG
TTTCCCCGGTAACGTGCGCGAGCTGGAGAACATGCTCGAGCGCGCCTACACCCTGTGCGAAGACGACCGCATCAGCGCCA
GCGACCTGCGCCTGGCCGACGCCGGCCCCGCCGGCGAAAACGGCGAGGCGAGCCTGGCGCAGATCGATAACCTGGAAGAC
CATCTGGAAGACATCGAACGCAAGCTGATCATGCAGGCATTGGAAGAAACCCGCTGGAACCGCACCGCAGCCGCCCAGCG
CCTGGGGCTGAGCTTTCGCTCCATGCGTTACCGGCTGAAGAAGCTGGGGATCGACTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(402-442)

Sigma-54 interaction domain (Sigma54_activat)

(136-301)

Response regulator receiver domain (Response_reg)

(7-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

87.191

100

0.872
  pilR Acinetobacter baumannii strain A118

50.435

100

0.521
  luxO Vibrio cholerae strain A1552

38.514

99.775

0.384