Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   KDW96_RS16245 Genome accession   NZ_CP073346
Coordinates   3466296..3467888 (-) Length   530 a.a.
NCBI ID   WP_255837260.1    Uniprot ID   -
Organism   Pseudomonas benzenivorans strain D13-4     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3461296..3472888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KDW96_RS16220 (KDW96_16165) pilV 3462150..3462587 (-) 438 WP_255837255.1 type IV pilus modification protein PilV -
  KDW96_RS16225 (KDW96_16170) - 3462614..3463129 (-) 516 WP_255837256.1 GspH/FimT family pseudopilin -
  KDW96_RS16230 (KDW96_16175) - 3463229..3463744 (-) 516 WP_255837257.1 GspH/FimT family pseudopilin -
  KDW96_RS16235 (KDW96_16180) thiO 3463810..3464919 (+) 1110 WP_255837258.1 glycine oxidase ThiO -
  KDW96_RS16240 (KDW96_16185) pilR 3464956..3466293 (-) 1338 WP_255837259.1 sigma-54 dependent transcriptional regulator Regulator
  KDW96_RS16245 (KDW96_16190) pilS 3466296..3467888 (-) 1593 WP_255837260.1 PAS domain-containing sensor histidine kinase Regulator
  KDW96_RS16250 (KDW96_16195) - 3467878..3468114 (-) 237 WP_255837261.1 PP0621 family protein -
  KDW96_RS16255 (KDW96_16200) - 3468291..3469922 (+) 1632 WP_255837262.1 NAD+ synthase -
  KDW96_RS16260 (KDW96_16205) - 3469998..3470987 (-) 990 WP_255837263.1 outer membrane protein assembly factor BamD -
  KDW96_RS16265 (KDW96_16210) rluD 3471135..3472109 (+) 975 WP_255837264.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  KDW96_RS16270 (KDW96_16215) pgeF 3472106..3472843 (+) 738 WP_255837265.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 58679.81 Da        Isoelectric Point: 8.4807

>NTDB_id=559108 KDW96_RS16245 WP_255837260.1 3466296..3467888(-) (pilS) [Pseudomonas benzenivorans strain D13-4]
MSTEVLPLSGPQGRRILRLYHLYRLAIGLALVLLISSDLDNDLLDLAHVDLFRNGSWFYLILNILVAVVVQRPRSLIQVF
SLALVDIILLSGLFYAAGGTPSGIGALLVVAVAIANILLRGRIGLLIAAVAAIGLIYLTFYLSLSRPAAAAQFVQVGALG
ALCFAAALFVQGITRRLHASESLAEQRAADVASLEALNALILQRMRTGILVLNDQHRVLLANQGALSLLGREALAGRILD
PHCPELVKRLQHWQQNPTLRPASLQAQPDGPVLQPSFVPLQRGEQRETLIFLDDISQVAQQAQQLKLASLGRLTAGIAHE
IRNPLGAISHAAQLLQESEDLQGPDQRLAQIIQDHSRRMNLVIENVLQLSRRRQAEPQLLDLKYWLHRFASEFRSSAPPD
RQLHLETQGGTIQTRMDPHQLTQVLTNLVQNGLRYSAQQHRQGQVWLKLFRDTDSELPVLEVLDDGPGVPAEQLQHIFEP
FYTTENKGTGLGLYISRELCESNQARLNYKPREDGGSCFRITFAHPRKLS

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=559108 KDW96_RS16245 WP_255837260.1 3466296..3467888(-) (pilS) [Pseudomonas benzenivorans strain D13-4]
GTGAGCACTGAGGTTCTGCCCCTGAGCGGCCCCCAGGGTCGACGCATCCTGCGGCTCTATCACCTGTACCGCCTGGCCAT
CGGACTGGCCCTGGTGCTGCTGATTTCCAGCGACCTGGACAACGACCTCCTGGACCTGGCCCACGTCGACCTGTTCCGCA
ACGGCAGCTGGTTCTACCTGATCCTGAACATCCTGGTCGCCGTGGTGGTGCAGCGACCACGCAGCCTCATTCAGGTGTTC
AGCCTGGCGCTGGTCGACATCATCCTGCTGTCCGGCCTGTTCTATGCCGCAGGCGGCACCCCCAGCGGCATCGGTGCTCT
GCTGGTGGTCGCGGTAGCGATCGCCAATATCCTGCTGCGCGGGCGTATCGGCCTGCTGATCGCCGCCGTCGCCGCCATCG
GCCTGATCTACCTGACCTTCTACCTCAGCCTCAGTCGACCGGCCGCCGCCGCCCAGTTCGTTCAGGTCGGCGCCCTCGGC
GCCCTGTGCTTCGCCGCCGCGCTGTTCGTCCAGGGCATCACCCGGCGCCTGCATGCCAGCGAAAGCCTGGCCGAACAGCG
GGCCGCCGATGTCGCCAGCCTGGAGGCGCTCAACGCCCTGATCCTGCAACGCATGCGCACCGGCATCCTGGTCCTCAACG
ACCAGCACCGCGTGCTGCTGGCCAACCAGGGCGCCCTCAGCCTGCTCGGCCGTGAGGCCCTGGCCGGCAGGATTCTCGAT
CCCCACTGCCCGGAGCTGGTCAAGCGCCTGCAGCACTGGCAGCAGAATCCGACCCTGCGTCCGGCCAGCCTGCAGGCCCA
GCCCGATGGCCCGGTTCTGCAGCCGAGCTTCGTGCCACTGCAACGCGGCGAGCAGCGCGAGACGCTGATCTTCCTCGACG
ATATTTCCCAGGTCGCCCAGCAGGCCCAGCAGCTCAAGCTGGCCTCCCTGGGCCGGCTGACCGCCGGCATCGCCCACGAG
ATCCGCAACCCGCTTGGCGCCATCAGCCATGCCGCCCAGCTTCTGCAGGAGTCGGAGGACCTGCAGGGCCCCGACCAGCG
CCTGGCGCAGATCATCCAGGACCACTCGCGGCGGATGAACCTGGTAATCGAGAACGTGCTGCAACTGTCACGCCGGCGCC
AGGCCGAGCCGCAGCTGCTGGACCTCAAGTACTGGCTGCACCGCTTTGCCAGCGAGTTTCGCAGCTCGGCGCCGCCCGAC
AGGCAACTGCACCTGGAGACCCAGGGCGGCACCATCCAGACCCGCATGGATCCGCACCAGCTGACCCAGGTGCTGACCAA
TCTGGTGCAGAACGGCCTGCGCTACAGTGCGCAGCAACATCGCCAGGGCCAGGTCTGGCTCAAGCTGTTTCGCGACACGG
ACAGCGAGCTGCCGGTGCTCGAGGTGCTGGACGACGGCCCCGGCGTGCCGGCCGAGCAGCTGCAGCACATCTTCGAGCCG
TTCTACACCACCGAGAACAAGGGCACCGGCCTGGGCCTGTATATTTCCCGTGAGCTGTGCGAAAGCAACCAGGCACGCCT
CAACTACAAACCTCGCGAAGACGGCGGCAGCTGCTTTCGCATCACCTTTGCCCACCCGCGCAAGCTGAGCTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

67.17

100

0.672