Detailed information
Bioinformatically predicted
Overview
| Name | cinA | Type | Machinery gene |
| Locus tag | KAW33_RS02565 | Genome accession | NZ_CP073317 |
| Coordinates | 537770..539011 (+) | Length | 413 a.a. |
| NCBI ID | WP_005688669.1 | Uniprot ID | A0A508YV25 |
| Organism | Lacticaseibacillus rhamnosus strain CE1 | ||
| Function | facilitate localization of RecA (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 529843..578739 | 537770..539011 | within | 0 |
Gene organization within MGE regions
Location: 529843..578739
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KAW33_RS02535 (KAW33_02535) | - | 530341..532641 (+) | 2301 | WP_211751595.1 | DNA translocase FtsK | - |
| KAW33_RS02540 (KAW33_02540) | - | 532650..533912 (+) | 1263 | WP_211751596.1 | pitrilysin family protein | - |
| KAW33_RS02545 (KAW33_02545) | - | 533909..535201 (+) | 1293 | WP_005688664.1 | pitrilysin family protein | - |
| KAW33_RS02550 (KAW33_02550) | - | 535201..535929 (+) | 729 | WP_005688666.1 | SDR family oxidoreductase | - |
| KAW33_RS02555 (KAW33_02555) | - | 536016..536951 (+) | 936 | WP_015764372.1 | helix-turn-helix domain-containing protein | - |
| KAW33_RS02560 (KAW33_02560) | pgsA | 536948..537541 (+) | 594 | WP_015764373.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| KAW33_RS02565 (KAW33_02565) | cinA | 537770..539011 (+) | 1242 | WP_005688669.1 | competence/damage-inducible protein A | Machinery gene |
| KAW33_RS02570 (KAW33_02570) | recA | 539063..540115 (+) | 1053 | WP_005688671.1 | recombinase RecA | Machinery gene |
| KAW33_RS02575 (KAW33_02575) | rny | 540740..542311 (+) | 1572 | WP_005684479.1 | ribonuclease Y | - |
| KAW33_RS02580 (KAW33_02580) | - | 542400..543056 (-) | 657 | WP_024129572.1 | YigZ family protein | - |
| KAW33_RS02585 (KAW33_02585) | - | 543084..544349 (+) | 1266 | WP_014571217.1 | DEAD/DEAH box helicase | - |
| KAW33_RS02590 (KAW33_02590) | - | 544508..545026 (+) | 519 | WP_005688681.1 | ComF family protein | - |
| KAW33_RS02595 (KAW33_02595) | raiA | 545217..545774 (+) | 558 | WP_005684485.1 | ribosome-associated translation inhibitor RaiA | - |
| KAW33_RS02605 (KAW33_02605) | secA | 546358..548721 (+) | 2364 | WP_005688686.1 | preprotein translocase subunit SecA | - |
| KAW33_RS02610 (KAW33_02610) | prfB | 548862..549978 (+) | 1117 | WP_154243967.1 | peptide chain release factor 2 | - |
| KAW33_RS02615 (KAW33_02615) | ftsE | 550055..550741 (+) | 687 | WP_005684489.1 | cell division ATP-binding protein FtsE | - |
| KAW33_RS02620 (KAW33_02620) | ftsX | 550731..551618 (+) | 888 | WP_005684490.1 | permease-like cell division protein FtsX | - |
| KAW33_RS02625 (KAW33_02625) | - | 551889..552986 (+) | 1098 | WP_211751597.1 | PDZ domain-containing protein | - |
| KAW33_RS02630 (KAW33_02630) | - | 552983..553687 (+) | 705 | WP_005688690.1 | response regulator transcription factor | - |
| KAW33_RS02635 (KAW33_02635) | - | 553680..555347 (+) | 1668 | WP_005688691.1 | ATP-binding protein | - |
| KAW33_RS02640 (KAW33_02640) | - | 555437..556303 (+) | 867 | WP_005688693.1 | phosphate ABC transporter substrate-binding protein PstS family protein | - |
| KAW33_RS02645 (KAW33_02645) | pstC | 556451..557374 (+) | 924 | WP_005684497.1 | phosphate ABC transporter permease subunit PstC | - |
| KAW33_RS02650 (KAW33_02650) | pstA | 557371..558255 (+) | 885 | WP_005684499.1 | phosphate ABC transporter permease PstA | - |
| KAW33_RS02655 (KAW33_02655) | pstB | 558326..559144 (+) | 819 | WP_014571222.1 | phosphate ABC transporter ATP-binding protein PstB | - |
| KAW33_RS02660 (KAW33_02660) | pstB | 559154..559918 (+) | 765 | WP_005684501.1 | phosphate ABC transporter ATP-binding protein PstB | - |
| KAW33_RS02665 (KAW33_02665) | phoU | 559929..560606 (+) | 678 | WP_005684502.1 | phosphate signaling complex protein PhoU | - |
| KAW33_RS02670 (KAW33_02670) | - | 560859..561758 (-) | 900 | WP_014569362.1 | IS3 family transposase | - |
| KAW33_RS02675 (KAW33_02675) | - | 561734..562462 (-) | 729 | WP_014569363.1 | helix-turn-helix domain-containing protein | - |
| KAW33_RS02680 (KAW33_02680) | liaX | 563031..564521 (+) | 1491 | WP_211751598.1 | daptomycin-sensing surface protein LiaX | - |
| KAW33_RS02685 (KAW33_02685) | - | 564533..564793 (+) | 261 | WP_005688700.1 | hypothetical protein | - |
| KAW33_RS02690 (KAW33_02690) | - | 564796..565131 (+) | 336 | WP_005684507.1 | phage holin family protein | - |
| KAW33_RS02695 (KAW33_02695) | hprK | 565399..566358 (+) | 960 | WP_005684508.1 | HPr(Ser) kinase/phosphatase | - |
| KAW33_RS02700 (KAW33_02700) | lgt | 566360..567187 (+) | 828 | WP_005684509.1 | prolipoprotein diacylglyceryl transferase | - |
| KAW33_RS02705 (KAW33_02705) | - | 567198..568253 (+) | 1056 | WP_015764377.1 | NAD(P)H-dependent glycerol-3-phosphate dehydrogenase | - |
| KAW33_RS02710 (KAW33_02710) | trxB | 568319..569266 (+) | 948 | WP_005684511.1 | thioredoxin-disulfide reductase | - |
| KAW33_RS02715 (KAW33_02715) | - | 569518..571245 (+) | 1728 | WP_211751599.1 | phospho-sugar mutase | - |
| KAW33_RS02720 (KAW33_02720) | - | 571704..572351 (+) | 648 | WP_005688713.1 | YfbR-like 5'-deoxynucleotidase | - |
| KAW33_RS02725 (KAW33_02725) | uvrB | 572622..574637 (+) | 2016 | WP_005688715.1 | excinuclease ABC subunit UvrB | - |
| KAW33_RS02730 (KAW33_02730) | uvrA | 574818..577712 (+) | 2895 | WP_211751600.1 | excinuclease ABC subunit UvrA | - |
| KAW33_RS02735 (KAW33_02735) | - | 577914..578453 (+) | 540 | WP_005688718.1 | DUF308 domain-containing protein | - |
Sequence
Protein
Download Length: 413 a.a. Molecular weight: 44384.10 Da Isoelectric Point: 8.3237
>NTDB_id=559031 KAW33_RS02565 WP_005688669.1 537770..539011(+) (cinA) [Lacticaseibacillus rhamnosus strain CE1]
MQAEIIAIGTEILMGQITNTNGAYMAKQLATLGIASYHQQVVGDNAKRLADAISLAEQRSDIVILIGGLGPTPDDLTKQT
LAAHLNLPLVEDAGAMAKLAARVKQQQRPMTPNNRLQAMYPKGAIVLANRVGLAVGAWVEQRQHAYVLLPGPPKEFVPMV
DHELLPRLAKYSGHQEVLESRVMRFFGVGESQLVTDLSDLIANQTNPTLATYIKDHEVTVRVTASGKTQAEAAAKLEPMI
GIIMDREGRYFYGYGDDNSLAQELVKALAASDKQISAAESLTAGAFQAALGDVPGVSAYFKGGFVTYALATKAAFLNIDA
RQLAEHGVVSEFTAKAMAEHARQRAAADIAVSFTGVAGPDKLEGQPAGTVWIGLARLGEKPIAQVYHFPGGRNDVRKRAV
MTGMMMVLKRLRE
MQAEIIAIGTEILMGQITNTNGAYMAKQLATLGIASYHQQVVGDNAKRLADAISLAEQRSDIVILIGGLGPTPDDLTKQT
LAAHLNLPLVEDAGAMAKLAARVKQQQRPMTPNNRLQAMYPKGAIVLANRVGLAVGAWVEQRQHAYVLLPGPPKEFVPMV
DHELLPRLAKYSGHQEVLESRVMRFFGVGESQLVTDLSDLIANQTNPTLATYIKDHEVTVRVTASGKTQAEAAAKLEPMI
GIIMDREGRYFYGYGDDNSLAQELVKALAASDKQISAAESLTAGAFQAALGDVPGVSAYFKGGFVTYALATKAAFLNIDA
RQLAEHGVVSEFTAKAMAEHARQRAAADIAVSFTGVAGPDKLEGQPAGTVWIGLARLGEKPIAQVYHFPGGRNDVRKRAV
MTGMMMVLKRLRE
Nucleotide
Download Length: 1242 bp
>NTDB_id=559031 KAW33_RS02565 WP_005688669.1 537770..539011(+) (cinA) [Lacticaseibacillus rhamnosus strain CE1]
ATGCAAGCAGAAATTATTGCTATCGGAACGGAAATTCTGATGGGACAAATCACAAATACAAATGGCGCGTATATGGCTAA
ACAACTGGCTACATTAGGTATTGCAAGCTATCATCAACAGGTTGTTGGGGATAACGCAAAACGACTGGCTGACGCGATAA
GTTTGGCTGAACAACGCAGTGATATCGTTATTTTGATTGGCGGTTTAGGACCAACACCGGATGATTTAACGAAGCAAACC
CTAGCCGCACACCTGAATTTACCCTTGGTGGAAGACGCTGGCGCTATGGCCAAGTTGGCTGCGCGGGTTAAACAACAGCA
ACGTCCAATGACACCCAATAATCGCTTGCAAGCGATGTATCCCAAAGGCGCAATCGTATTGGCCAATCGTGTTGGGTTGG
CGGTCGGCGCATGGGTTGAGCAGCGCCAACACGCCTATGTTTTATTGCCGGGACCACCTAAAGAGTTTGTGCCAATGGTT
GATCATGAACTGTTGCCACGACTGGCAAAATATAGCGGGCATCAAGAAGTTTTGGAAAGTCGCGTGATGCGTTTCTTTGG
TGTCGGCGAATCGCAACTTGTGACAGATTTAAGTGATTTAATTGCCAACCAGACGAATCCGACACTTGCAACTTATATAA
AAGATCATGAGGTGACAGTTCGGGTAACTGCGAGTGGCAAAACACAAGCAGAAGCCGCGGCAAAACTTGAGCCAATGATC
GGCATCATTATGGATCGTGAAGGCCGCTACTTTTACGGCTACGGTGACGATAACAGTCTTGCTCAGGAATTAGTCAAAGC
ATTGGCGGCTAGTGATAAGCAAATTAGTGCCGCTGAAAGCCTGACTGCAGGTGCATTTCAAGCGGCATTGGGAGACGTTC
CGGGAGTCTCGGCTTATTTCAAAGGCGGCTTCGTTACGTACGCTTTAGCGACAAAAGCTGCATTTTTAAATATCGATGCC
CGTCAGCTAGCAGAACATGGTGTGGTGAGTGAATTTACTGCCAAAGCAATGGCAGAGCATGCTCGTCAACGAGCCGCGGC
AGACATTGCCGTTAGTTTTACCGGAGTTGCCGGTCCTGACAAGCTGGAAGGACAGCCAGCCGGCACCGTCTGGATTGGTT
TGGCGCGGTTAGGAGAGAAACCAATAGCACAAGTTTATCATTTTCCGGGTGGGCGAAATGACGTCCGCAAGCGCGCCGTT
ATGACGGGGATGATGATGGTGTTGAAGCGTTTACGCGAATAA
ATGCAAGCAGAAATTATTGCTATCGGAACGGAAATTCTGATGGGACAAATCACAAATACAAATGGCGCGTATATGGCTAA
ACAACTGGCTACATTAGGTATTGCAAGCTATCATCAACAGGTTGTTGGGGATAACGCAAAACGACTGGCTGACGCGATAA
GTTTGGCTGAACAACGCAGTGATATCGTTATTTTGATTGGCGGTTTAGGACCAACACCGGATGATTTAACGAAGCAAACC
CTAGCCGCACACCTGAATTTACCCTTGGTGGAAGACGCTGGCGCTATGGCCAAGTTGGCTGCGCGGGTTAAACAACAGCA
ACGTCCAATGACACCCAATAATCGCTTGCAAGCGATGTATCCCAAAGGCGCAATCGTATTGGCCAATCGTGTTGGGTTGG
CGGTCGGCGCATGGGTTGAGCAGCGCCAACACGCCTATGTTTTATTGCCGGGACCACCTAAAGAGTTTGTGCCAATGGTT
GATCATGAACTGTTGCCACGACTGGCAAAATATAGCGGGCATCAAGAAGTTTTGGAAAGTCGCGTGATGCGTTTCTTTGG
TGTCGGCGAATCGCAACTTGTGACAGATTTAAGTGATTTAATTGCCAACCAGACGAATCCGACACTTGCAACTTATATAA
AAGATCATGAGGTGACAGTTCGGGTAACTGCGAGTGGCAAAACACAAGCAGAAGCCGCGGCAAAACTTGAGCCAATGATC
GGCATCATTATGGATCGTGAAGGCCGCTACTTTTACGGCTACGGTGACGATAACAGTCTTGCTCAGGAATTAGTCAAAGC
ATTGGCGGCTAGTGATAAGCAAATTAGTGCCGCTGAAAGCCTGACTGCAGGTGCATTTCAAGCGGCATTGGGAGACGTTC
CGGGAGTCTCGGCTTATTTCAAAGGCGGCTTCGTTACGTACGCTTTAGCGACAAAAGCTGCATTTTTAAATATCGATGCC
CGTCAGCTAGCAGAACATGGTGTGGTGAGTGAATTTACTGCCAAAGCAATGGCAGAGCATGCTCGTCAACGAGCCGCGGC
AGACATTGCCGTTAGTTTTACCGGAGTTGCCGGTCCTGACAAGCTGGAAGGACAGCCAGCCGGCACCGTCTGGATTGGTT
TGGCGCGGTTAGGAGAGAAACCAATAGCACAAGTTTATCATTTTCCGGGTGGGCGAAATGACGTCCGCAAGCGCGCCGTT
ATGACGGGGATGATGATGGTGTTGAAGCGTTTACGCGAATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| cinA | Streptococcus mitis SK321 |
51.781 |
100 |
0.528 |
| cinA | Streptococcus mitis NCTC 12261 |
51.781 |
100 |
0.528 |
| cinA | Streptococcus pneumoniae TIGR4 |
51.306 |
100 |
0.523 |
| cinA | Streptococcus pneumoniae Rx1 |
50.831 |
100 |
0.518 |
| cinA | Streptococcus pneumoniae R6 |
50.831 |
100 |
0.518 |
| cinA | Streptococcus pneumoniae D39 |
50.594 |
100 |
0.516 |
| cinA | Streptococcus mutans UA159 |
51.202 |
100 |
0.516 |
| cinA | Bacillus subtilis subsp. subtilis str. 168 |
44.417 |
99.758 |
0.443 |
| cinA | Streptococcus suis isolate S10 |
41.534 |
91.525 |
0.38 |