Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   KC397_RS05285 Genome accession   NZ_CP073273
Coordinates   1144990..1145583 (+) Length   197 a.a.
NCBI ID   WP_024374700.1    Uniprot ID   -
Organism   Vibrio fluvialis strain 19-VB00936     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1139990..1150583
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KC397_RS05265 (KC397_05265) panP 1140330..1141973 (-) 1644 WP_208563466.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -
  KC397_RS05270 (KC397_05270) - 1142113..1142625 (-) 513 WP_020327716.1 hypothetical protein -
  KC397_RS05275 (KC397_05275) - 1142772..1143677 (-) 906 WP_020327715.1 lysine exporter LysO family protein -
  KC397_RS05280 (KC397_05280) - 1143697..1144617 (-) 921 WP_020327714.1 HDOD domain-containing protein -
  KC397_RS05285 (KC397_05285) tfoX 1144990..1145583 (+) 594 WP_024374700.1 TfoX/Sxy family DNA transformation protein Regulator
  KC397_RS05290 (KC397_05290) - 1145679..1146227 (-) 549 WP_020327712.1 hypothetical protein -
  KC397_RS05295 (KC397_05295) - 1146453..1146950 (-) 498 WP_020327711.1 response regulator -
  KC397_RS05300 (KC397_05300) - 1146973..1148904 (-) 1932 WP_212571471.1 ATP-binding protein -
  KC397_RS05305 (KC397_05305) - 1149134..1150405 (+) 1272 WP_212571473.1 DUF945 family protein -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 23200.67 Da        Isoelectric Point: 7.8116

>NTDB_id=558721 KC397_RS05285 WP_024374700.1 1144990..1145583(+) (tfoX) [Vibrio fluvialis strain 19-VB00936]
MDMFEHRFFDYVIKFGTYQKRSMFGGIGLFQQDAMYALLTEDCIFIRGGEDLDEVLTNLGCDKYRHVKKQTTATVNYYDI
TQLFEQNHSELDSIIERSILYSIEQRSFQKSQANRRLRDLPNMQLTLERMVKKAGVDDVETFMRLGAPDVFNKVRRIYGS
DLDVKLLWKFAGAIEGIHWKLLQEPRKRQLLDICHGR

Nucleotide


Download         Length: 594 bp        

>NTDB_id=558721 KC397_RS05285 WP_024374700.1 1144990..1145583(+) (tfoX) [Vibrio fluvialis strain 19-VB00936]
ATGGATATGTTTGAGCATAGATTTTTCGATTATGTAATTAAGTTTGGTACCTACCAAAAACGTTCTATGTTTGGTGGTAT
TGGGTTGTTCCAGCAAGACGCGATGTATGCGCTGCTGACAGAAGATTGCATTTTCATTCGCGGCGGCGAAGATCTCGATG
AAGTTTTGACGAATCTTGGCTGTGATAAGTACCGTCATGTGAAGAAGCAGACAACGGCCACCGTTAATTACTACGATATT
ACGCAGTTATTTGAACAGAACCACTCTGAACTGGACTCCATTATTGAACGTTCAATACTGTATTCCATTGAGCAGCGCTC
TTTTCAGAAATCCCAGGCGAACCGTCGTTTGAGGGATTTACCGAATATGCAGTTGACGCTGGAACGAATGGTAAAGAAAG
CGGGCGTTGACGATGTGGAAACATTCATGCGTCTGGGTGCACCGGATGTGTTTAACAAAGTTCGCCGCATTTATGGCAGC
GATCTGGATGTGAAGTTATTGTGGAAGTTTGCCGGAGCGATTGAAGGTATTCACTGGAAATTGCTGCAAGAGCCGCGTAA
GCGCCAATTGCTCGATATCTGTCACGGTCGTTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(114-192)

TfoX N-terminal domain (TfoX_N)

(12-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

80

98.985

0.792
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

80

98.985

0.792
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

80

98.985

0.792
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

80

98.985

0.792
  tfoX Vibrio cholerae strain A1552

80

98.985

0.792
  tfoX Vibrio campbellii strain DS40M4

67.692

98.985

0.67
  tfoX Vibrio parahaemolyticus RIMD 2210633

67.179

98.985

0.665
  tfoX Aliivibrio fischeri ES114

58.115

96.954

0.563