Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaR   Type   Regulator
Locus tag   L2Z43_RS08235 Genome accession   NZ_CP091334
Coordinates   1766483..1767157 (-) Length   224 a.a.
NCBI ID   WP_000161505.1    Uniprot ID   A0A0D5YFC9
Organism   Acinetobacter baumannii strain ATCC19606-VUB     
Function   repress competence development; post-transcriptional repression of CSP production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1761483..1772157
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2Z43_RS08210 (L2Z43_08210) - 1761758..1762642 (+) 885 WP_000144734.1 LysR family transcriptional regulator -
  L2Z43_RS08215 (L2Z43_08215) - 1762945..1764132 (+) 1188 WP_002135016.1 ammonium transporter -
  L2Z43_RS08220 (L2Z43_08220) - 1764181..1764342 (-) 162 WP_100743397.1 hypothetical protein -
  L2Z43_RS08225 (L2Z43_08225) - 1764412..1765122 (+) 711 WP_005143680.1 phosphatase PAP2 family protein -
  L2Z43_RS08230 (L2Z43_08230) - 1765123..1766457 (-) 1335 WP_000559383.1 two-component system sensor histidine kinase PmrB -
  L2Z43_RS08235 (L2Z43_08235) ciaR 1766483..1767157 (-) 675 WP_000161505.1 response regulator transcription factor Regulator
  L2Z43_RS08240 (L2Z43_08240) - 1767172..1768821 (-) 1650 WP_031946429.1 phosphoethanolamine--lipid A transferase -
  L2Z43_RS08245 (L2Z43_08245) - 1769003..1770307 (-) 1305 WP_000362917.1 DcaP family trimeric outer membrane transporter -
  L2Z43_RS08250 (L2Z43_08250) - 1770853..1772100 (-) 1248 WP_000489713.1 MFS transporter -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 25548.47 Da        Isoelectric Point: 5.3246

>NTDB_id=558549 L2Z43_RS08235 WP_000161505.1 1766483..1767157(-) (ciaR) [Acinetobacter baumannii strain ATCC19606-VUB]
MTKILMIEDDFMIAESTITLLQYHQFEVEWVNNGLDGLAQLAKTKFDLILLDLGLPMMDGMQVLKQIRQRAATPVLIISA
RDQLQNRVDGLNLGADDYLIKPYEFDELLARIHALLRRSGVEAQLASQDQLLESGDLVLNVEQHIATFKGQRIDLSNREW
AILIPLMTHPNKIFSKANLEDKLYDFDSDVTSNTIEVYVHHLRAKLGKDFIRTIRGLGYRLGQS

Nucleotide


Download         Length: 675 bp        

>NTDB_id=558549 L2Z43_RS08235 WP_000161505.1 1766483..1767157(-) (ciaR) [Acinetobacter baumannii strain ATCC19606-VUB]
ATGACAAAAATCTTGATGATTGAAGATGATTTTATGATTGCAGAATCAACGATCACGTTGCTGCAATATCATCAATTTGA
GGTGGAATGGGTCAATAACGGTTTAGATGGTTTGGCTCAATTGGCGAAGACTAAATTTGATCTTATTCTTTTGGATTTAG
GATTGCCTATGATGGATGGTATGCAAGTTTTAAAGCAGATCCGTCAAAGAGCAGCAACACCAGTATTAATTATTTCTGCT
CGAGATCAATTACAAAACCGTGTCGATGGTTTAAATTTGGGTGCAGATGATTATTTAATTAAACCTTATGAGTTTGATGA
GTTGCTTGCCCGTATTCATGCATTACTACGCCGTAGTGGAGTAGAAGCTCAACTTGCGAGTCAAGATCAACTATTAGAAA
GTGGCGATCTGGTTTTAAATGTTGAACAGCATATTGCGACGTTTAAAGGTCAACGCATTGATCTATCAAATCGTGAATGG
GCAATCTTAATTCCACTTATGACTCACCCAAATAAAATCTTTTCTAAAGCCAACTTAGAAGATAAGTTATATGATTTTGA
TAGTGATGTGACCAGTAATACTATTGAAGTATATGTTCACCATTTAAGAGCGAAGCTGGGTAAAGATTTTATCCGAACCA
TCCGAGGACTGGGCTACCGTTTGGGGCAATCATAA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(150-221)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 9OF3
  PDB 9OF4
  PDB 9OF5
  PDB 9OF6
  PDB 9OF7
  PDB 9OF8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaR Streptococcus pneumoniae Rx1

38.496

100

0.388
  ciaR Streptococcus pneumoniae D39

38.496

100

0.388
  ciaR Streptococcus pneumoniae R6

38.496

100

0.388
  ciaR Streptococcus pneumoniae TIGR4

38.496

100

0.388
  ciaR Streptococcus mutans UA159

37.445

100

0.379
  micA Streptococcus pneumoniae Cp1015

35.965

100

0.366