Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KCV10_RS08340 Genome accession   NZ_CP073243
Coordinates   1809055..1809642 (+) Length   195 a.a.
NCBI ID   WP_004705007.1    Uniprot ID   N8SBP5
Organism   Acinetobacter seifertii strain S63-3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1804055..1814642
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCV10_RS08315 - 1804128..1804934 (-) 807 WP_212512148.1 SDR family NAD(P)-dependent oxidoreductase -
  KCV10_RS08320 - 1805038..1805409 (-) 372 WP_049065867.1 MerR family transcriptional regulator -
  KCV10_RS08325 tenA 1805474..1806148 (-) 675 WP_039255497.1 thiaminase II -
  KCV10_RS08330 - 1806411..1807493 (+) 1083 WP_004705003.1 DUF475 domain-containing protein -
  KCV10_RS08335 - 1807640..1809004 (+) 1365 WP_212512149.1 MFS transporter -
  KCV10_RS08340 ssb 1809055..1809642 (+) 588 WP_004705007.1 single-stranded DNA-binding protein Machinery gene
  KCV10_RS08345 - 1809899..1810741 (-) 843 WP_212512150.1 HNH endonuclease -
  KCV10_RS08350 - 1810738..1812495 (-) 1758 WP_212512151.1 AAA family ATPase -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21137.90 Da        Isoelectric Point: 6.4822

>NTDB_id=558448 KCV10_RS08340 WP_004705007.1 1809055..1809642(+) (ssb) [Acinetobacter seifertii strain S63-3]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSESWTDKNTGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDARQQGEQGFAGGNDFNQPRFNAPQQGGGYQNNNNQGGGYGQNNGGGYGGQG
GFGNGGNSPQGGGFAPKAPQQPASAPADLDDDLPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=558448 KCV10_RS08340 WP_004705007.1 1809055..1809642(+) (ssb) [Acinetobacter seifertii strain S63-3]
ATGCGTGGTGTAAATAAGGTTATTTTGGTTGGTACTTTGGGTCGTGATCCTGAAACAAAAACTTTTCCAAATGGGGGTTC
GTTGACCCAATTTTCGATCGCGACAAGTGAATCTTGGACTGATAAAAATACAGGTGAACGTAAAGAACAAACAGAATGGC
ACCGTATTGTTTTGCATAACCGTTTAGGGGAAATTGCTCAGCAGTTTTTACGTAAAGGTTCTAAGGTTTACATTGAAGGT
TCATTACGTACACGTCAATGGACAGATCAAAATGGCCAAGAGCGTTATACGACAGAAATCCGTGGCGACCAGATGCAAAT
GTTAGATGCTCGTCAACAAGGTGAACAAGGTTTCGCTGGCGGTAATGATTTTAATCAACCACGTTTTAACGCACCTCAAC
AAGGTGGCGGTTATCAAAATAATAACAACCAAGGTGGCGGCTACGGTCAAAACAATGGCGGTGGTTATGGTGGCCAAGGT
GGTTTCGGTAATGGTGGAAACAGCCCGCAAGGTGGTGGATTTGCTCCTAAAGCGCCGCAACAACCAGCGTCTGCACCAGC
TGATTTAGACGATGATTTACCATTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N8SBP5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.691

100

0.549
  ssb Vibrio cholerae strain A1552

44.335

100

0.462
  ssb Neisseria meningitidis MC58

37.879

100

0.385
  ssb Neisseria gonorrhoeae MS11

37.879

100

0.385