Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   KCV10_RS06405 Genome accession   NZ_CP073243
Coordinates   1389412..1390542 (+) Length   376 a.a.
NCBI ID   WP_212512028.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain S63-3     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 1384412..1395542
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCV10_RS06380 - 1384675..1384881 (-) 207 WP_039252952.1 hypothetical protein -
  KCV10_RS06385 - 1384935..1387049 (-) 2115 WP_212512027.1 TonB-dependent copper receptor -
  KCV10_RS06390 - 1387123..1387548 (-) 426 WP_004705923.1 DUF2946 family protein -
  KCV10_RS06395 def 1387584..1388114 (-) 531 WP_004705924.1 peptide deformylase -
  KCV10_RS06400 tsaP 1388237..1389391 (+) 1155 WP_100192359.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  KCV10_RS06405 dprA 1389412..1390542 (+) 1131 WP_212512028.1 DNA-processing protein DprA Machinery gene
  KCV10_RS06410 - 1390593..1391162 (+) 570 WP_019458003.1 L-threonylcarbamoyladenylate synthase -
  KCV10_RS06415 - 1391553..1392473 (-) 921 WP_004705929.1 DMT family transporter -
  KCV10_RS06420 - 1392580..1393233 (-) 654 WP_077164355.1 TetR/AcrR family transcriptional regulator -
  KCV10_RS06425 - 1393369..1394583 (+) 1215 WP_039252932.1 MFS transporter -
  KCV10_RS06430 - 1394604..1395368 (+) 765 WP_212512029.1 AraC family transcriptional regulator -

Sequence


Protein


Download         Length: 376 a.a.        Molecular weight: 41951.60 Da        Isoelectric Point: 6.5807

>NTDB_id=558445 KCV10_RS06405 WP_212512028.1 1389412..1390542(+) (dprA) [Acinetobacter seifertii strain S63-3]
MLTQLSSHHYHTLKVWYLVQHSLVSFKKIIDYFGDCEKATQPDGLAKWQSLGLHANHLKRLNEFQTAQGQTEFERLIQQV
QQHTDFILTPDDAGYPTQLLPYTDHPPVIFGKGQAQALLQPQIAIVGSRKPSPHGRQVAYDFAYYLSEKGFYISSGLAYG
IDEAAHQGASVHQRTIAVTGTGLDSTYPAQNKKLAEHILAQNGAIISEFLPRTPPLQQHFPRRNRIVSGLSLGVLVVEAT
LKSGSLITANKAAEQGKIVFAIPGHIYSEFHQGCHQLIREGAILVDHPEQIIEDLALPTQWQSQQNSTEEAIVSCTPEIP
EHLINLYQSLDWVGQNIDQLVLHHSQTVSELTSSLMELELLGLCMQQSGLYLRCRS

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=558445 KCV10_RS06405 WP_212512028.1 1389412..1390542(+) (dprA) [Acinetobacter seifertii strain S63-3]
ATGCTTACCCAACTTTCTTCACACCATTACCACACACTTAAAGTGTGGTATTTGGTGCAACACTCATTAGTTAGCTTCAA
AAAAATTATTGATTATTTTGGAGACTGTGAAAAAGCCACTCAACCTGATGGTTTAGCAAAGTGGCAATCTCTTGGCTTAC
ATGCTAATCACTTAAAGCGTCTAAATGAGTTTCAAACGGCGCAAGGTCAAACCGAGTTTGAACGACTTATACAACAAGTT
CAGCAGCATACTGATTTTATTTTAACGCCAGATGATGCTGGCTATCCAACTCAATTACTCCCTTATACAGATCATCCACC
TGTTATTTTTGGAAAAGGTCAGGCACAAGCATTATTACAACCGCAAATTGCGATTGTCGGTAGCCGAAAACCTAGCCCAC
ATGGTCGTCAGGTGGCTTATGATTTTGCCTATTATTTAAGTGAAAAAGGTTTTTATATAAGTAGCGGCTTGGCATACGGC
ATTGATGAAGCAGCTCATCAAGGTGCATCTGTTCATCAACGTACGATAGCAGTGACAGGTACAGGTTTAGACAGTACCTA
TCCAGCTCAAAATAAAAAATTGGCAGAACATATTTTGGCTCAGAATGGCGCCATTATTAGTGAGTTTTTACCGAGAACAC
CACCACTACAGCAGCATTTTCCACGTAGAAACCGAATTGTTAGCGGTCTGAGTTTAGGCGTATTAGTTGTAGAAGCGACT
TTAAAAAGCGGCTCCCTCATTACTGCCAATAAAGCAGCTGAGCAAGGGAAAATCGTATTTGCCATTCCCGGTCATATTTA
CAGTGAATTTCATCAAGGTTGCCATCAACTTATTCGTGAAGGTGCAATTTTAGTCGATCACCCTGAACAAATTATTGAAG
ACCTCGCCCTCCCCACCCAATGGCAGAGCCAACAAAACTCAACAGAGGAGGCAATCGTTTCTTGCACCCCAGAAATTCCA
GAGCATTTGATTAATCTTTATCAGTCTTTAGACTGGGTAGGCCAAAATATTGACCAGCTTGTTTTGCATCATTCACAAAC
TGTTTCTGAACTCACCTCATCATTGATGGAACTAGAACTACTCGGTTTATGTATGCAACAATCAGGATTGTATTTACGTT
GTCGTTCTTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii strain A118

90.957

100

0.91

  dprA Acinetobacter baumannii D1279779

90.957

100

0.91

  dprA Acinetobacter baylyi ADP1

71.916

100

0.729