Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   KCV10_RS06400 Genome accession   NZ_CP073243
Coordinates   1388237..1389391 (+) Length   384 a.a.
NCBI ID   WP_100192359.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain S63-3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1383237..1394391
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCV10_RS06375 - 1383392..1384606 (+) 1215 WP_212512026.1 oxygenase MpaB family protein -
  KCV10_RS06380 - 1384675..1384881 (-) 207 WP_039252952.1 hypothetical protein -
  KCV10_RS06385 - 1384935..1387049 (-) 2115 WP_212512027.1 TonB-dependent copper receptor -
  KCV10_RS06390 - 1387123..1387548 (-) 426 WP_004705923.1 DUF2946 family protein -
  KCV10_RS06395 def 1387584..1388114 (-) 531 WP_004705924.1 peptide deformylase -
  KCV10_RS06400 tsaP 1388237..1389391 (+) 1155 WP_100192359.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  KCV10_RS06405 dprA 1389412..1390542 (+) 1131 WP_212512028.1 DNA-processing protein DprA Machinery gene
  KCV10_RS06410 - 1390593..1391162 (+) 570 WP_019458003.1 L-threonylcarbamoyladenylate synthase -
  KCV10_RS06415 - 1391553..1392473 (-) 921 WP_004705929.1 DMT family transporter -
  KCV10_RS06420 - 1392580..1393233 (-) 654 WP_077164355.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42352.27 Da        Isoelectric Point: 8.2514

>NTDB_id=558444 KCV10_RS06400 WP_100192359.1 1388237..1389391(+) (tsaP) [Acinetobacter seifertii strain S63-3]
MKKVFDGMVQFHALGIKKHLLALALCTGVAFGTVAEVHAASPNHNPPSLKSNAPNVYIVKRGDTLWDISGHFLNKPWRWP
EIWASNQHVKNPHWIYPGDRLLLCSLDGRPLVGKDEGDGCVGIIRRYTGQTTNLQPQVRVEALNNSVPVIPLEHIKQWLE
HSTILPADSIANTPYIVGTADQRVLAGKGQTIYARGKGLVEGQRYAVYREGEPYYFTDSKGKKHSLGIELSQVASGVAMS
TEKDITTLELTDSYDGEVRRGDRVMPEEQANLPTLFYPVDAKQVTDGGKIIRVMGSIGRAAKNSVVTLDRGTAQGVQVGQ
VFDIDQQGETIRDPKTKEPIQLPGQQIGSLMVFRTFDQLSYAYVLESNLPIKVGSSIQPPRFTD

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=558444 KCV10_RS06400 WP_100192359.1 1388237..1389391(+) (tsaP) [Acinetobacter seifertii strain S63-3]
ATGAAAAAGGTTTTTGACGGCATGGTTCAATTTCATGCTTTGGGGATAAAAAAGCATTTACTTGCTTTAGCACTCTGTAC
AGGGGTTGCATTTGGTACGGTAGCAGAGGTTCATGCTGCCAGTCCGAATCATAATCCGCCTTCTCTTAAAAGTAATGCAC
CCAATGTGTATATTGTAAAACGTGGAGATACCCTATGGGATATTTCCGGTCATTTTCTAAATAAACCATGGCGTTGGCCT
GAAATCTGGGCAAGCAACCAACATGTGAAAAATCCACACTGGATCTATCCTGGTGACAGATTACTACTGTGTAGCTTAGA
TGGACGACCATTGGTAGGTAAAGATGAAGGAGATGGCTGTGTAGGTATTATTCGTCGTTACACAGGCCAAACCACGAACT
TGCAACCACAAGTTCGTGTCGAAGCATTAAATAACAGTGTACCGGTTATTCCACTTGAACATATTAAACAGTGGTTAGAG
CACAGTACTATTTTACCAGCCGATTCAATTGCCAACACACCTTACATTGTTGGGACAGCCGATCAACGTGTACTTGCAGG
AAAAGGCCAAACTATTTATGCAAGAGGAAAAGGTCTAGTTGAAGGTCAGCGCTATGCTGTTTATCGCGAAGGCGAACCTT
ACTATTTCACAGACAGTAAAGGTAAAAAGCATAGTTTAGGCATAGAGCTGTCACAGGTTGCTTCTGGTGTTGCGATGTCT
ACTGAAAAAGACATTACCACATTAGAACTTACCGATAGCTACGATGGTGAAGTACGTCGTGGCGATCGTGTTATGCCTGA
AGAACAAGCTAATTTACCAACATTATTTTACCCTGTAGACGCTAAGCAAGTGACTGACGGTGGCAAAATTATTCGCGTCA
TGGGATCAATTGGTAGAGCTGCAAAAAATAGTGTCGTGACTTTAGACCGCGGTACAGCACAAGGTGTTCAGGTTGGTCAA
GTTTTTGATATTGATCAACAAGGCGAGACCATTCGCGATCCAAAAACAAAAGAACCAATTCAGCTCCCTGGTCAACAAAT
TGGTAGTTTAATGGTCTTTAGAACTTTTGATCAGCTAAGCTATGCTTATGTTCTAGAAAGCAACTTACCAATTAAAGTCG
GTTCAAGCATTCAGCCACCTCGTTTTACTGATTAG

Domains

Predicted by InterproScan.

LysM domain (LysM)

(57-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

92.708

100

0.927