Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KCV09_RS12960 Genome accession   NZ_CP073241
Coordinates   2816492..2817064 (+) Length   190 a.a.
NCBI ID   WP_076033164.1    Uniprot ID   -
Organism   Acinetobacter soli strain M3-1-68     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2811492..2822064
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCV09_RS12935 - 2812104..2812457 (+) 354 WP_004944844.1 DUF1304 domain-containing protein -
  KCV09_RS12940 - 2812535..2812876 (+) 342 WP_151796869.1 GlpM family protein -
  KCV09_RS12945 tenA 2812980..2813651 (-) 672 WP_151815627.1 thiaminase II -
  KCV09_RS12950 - 2813853..2814935 (+) 1083 WP_004934038.1 DUF475 domain-containing protein -
  KCV09_RS12955 - 2815076..2816440 (+) 1365 WP_212515241.1 MFS transporter -
  KCV09_RS12960 ssb 2816492..2817064 (+) 573 WP_076033164.1 single-stranded DNA-binding protein Machinery gene
  KCV09_RS12965 - 2817520..2818959 (+) 1440 WP_004934048.1 amino acid permease -
  KCV09_RS12970 - 2819032..2820531 (-) 1500 WP_048765311.1 PLP-dependent aminotransferase family protein -
  KCV09_RS12975 gabT 2820683..2821978 (+) 1296 WP_004944850.1 4-aminobutyrate--2-oxoglutarate transaminase -

Sequence

Protein


Download         Length: 190 a.a.        Molecular weight: 20902.67 Da        Isoelectric Point: 7.0146

>NTDB_id=558409 KCV09_RS12960 WP_076033164.1 2816492..2817064(+) (ssb) [Acinetobacter soli strain M3-1-68]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSESWTDKSTGERKEQTEWHRIVLNNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDTRSQGEQPMGGGQDYNQPRFNNNAPQNTGYNNQGGGYNNKNNAGANQGGGY
GNNAAGNQGGYAPKAPQQPAPADLDDDLPF

Nucleotide


Download         Length: 573 bp        

>NTDB_id=558409 KCV09_RS12960 WP_076033164.1 2816492..2817064(+) (ssb) [Acinetobacter soli strain M3-1-68]
ATGCGTGGTGTGAATAAAGTAATTTTAGTTGGGACCTTGGGCCGTGACCCGGAAACCAAAACGTTTCCAAATGGCGGGTC
ATTGACTCAATTTTCGATTGCAACCAGCGAATCGTGGACAGATAAAAGTACGGGTGAGCGTAAAGAGCAAACCGAATGGC
ATCGTATTGTGTTGAATAACCGTTTAGGTGAAATTGCACAGCAATACCTGCGTAAAGGTTCAAAAGTGTACATTGAGGGT
TCATTGCGTACCCGCCAGTGGACAGACCAAAACGGTCAAGAACGCTATACCACCGAAATTCGTGGTGACCAGATGCAAAT
GCTTGATACACGTAGCCAAGGCGAGCAGCCTATGGGTGGTGGTCAGGACTACAATCAGCCACGCTTTAACAACAATGCAC
CGCAAAACACTGGCTATAACAACCAAGGCGGTGGTTATAACAACAAAAATAACGCTGGTGCCAACCAAGGTGGCGGTTAT
GGCAACAATGCTGCGGGCAATCAAGGTGGTTATGCACCTAAAGCGCCACAGCAACCTGCTCCAGCAGATCTAGACGACGA
CTTACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

54.737

100

0.547
  ssb Vibrio cholerae strain A1552

43.434

100

0.453
  ssb Neisseria meningitidis MC58

39.896

100

0.405
  ssb Neisseria gonorrhoeae MS11

39.896

100

0.405