Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   KCG51_RS10030 Genome accession   NZ_CP073119
Coordinates   2123681..2125813 (-) Length   710 a.a.
NCBI ID   WP_250580891.1    Uniprot ID   -
Organism   Neisseria subflava strain HP0069     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2118681..2130813
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG51_RS10005 (KCG51_10035) - 2119071..2119637 (+) 567 WP_250580887.1 NADPH-dependent FMN reductase -
  KCG51_RS10010 (KCG51_10040) - 2119784..2120461 (+) 678 WP_250580888.1 response regulator -
  KCG51_RS10015 (KCG51_10045) - 2120491..2121804 (+) 1314 WP_250580889.1 ATP-binding protein -
  KCG51_RS10020 (KCG51_10050) aroB 2121934..2123013 (-) 1080 WP_107848890.1 3-dehydroquinate synthase -
  KCG51_RS10025 (KCG51_10055) - 2123036..2123548 (-) 513 WP_283255400.1 shikimate kinase -
  KCG51_RS10030 (KCG51_10060) pilQ 2123681..2125813 (-) 2133 WP_250580891.1 type IV pilus secretin PilQ Machinery gene
  KCG51_RS10035 (KCG51_10065) pilP 2125834..2126376 (-) 543 WP_003684527.1 pilus assembly protein PilP Machinery gene
  KCG51_RS10040 (KCG51_10070) pilO 2126392..2127063 (-) 672 WP_004520855.1 type 4a pilus biogenesis protein PilO -
  KCG51_RS10045 (KCG51_10075) pilN 2127063..2127686 (-) 624 WP_250580892.1 PilN domain-containing protein Machinery gene
  KCG51_RS10050 (KCG51_10080) pilM 2127691..2128782 (-) 1092 WP_250580893.1 type IV pilus assembly protein PilM -

Sequence

Protein


Download         Length: 710 a.a.        Molecular weight: 78104.19 Da        Isoelectric Point: 9.6084

>NTDB_id=558178 KCG51_RS10030 WP_250580891.1 2123681..2125813(-) (pilQ) [Neisseria subflava strain HP0069]
MKTKHMTKLFAGFSVALAVQTAFAGNITDINVSTLPDNQKIIKIRFDKDVTTPHGFVTSTPARIALDFANTNIRLPQPVL
EYADPLLNQITAAQNNDRARVVLGLNKISQYNTEIRGNEVWVFVNESTDQTNAAVANERAATPSTARAAQTYQAVSAANI
DFRKGARNSGIIELSAPGFSGQPDIKQQRDRVVVTLKNHTLPTQAQRSLDVADFNTPVQNVTLKRIGNSTQLIIRNNNAN
WDINTKASSGRFVFEVSPKAANTESSGLNHNENKSFKGRKISLDFQDVEVRTILQILAKESGVNIVASDTVKGTMTLSLK
DVPWDQALDLVMQARNLDMRRQGNIINIAPRDELLAKDKAFLQAEKEIAELGPLYSQTFQLKYKNVEEFRKILRLEEYDS
NNSNTRNTLLSNRGSALIDPATNTLIVTDNRGVIEKFRKLIDELDVPTRQVMVEARIVEAEDTFFRNLGVKFGSGGASGR
NAWGSNWSNAQTNYNTNASFNRGDVGYRTWTLDPNVSLPTAAAVNSIALVRAFSSGALGLEISASEEQGKSKTISNPRVL
TQDRKEAKIESGTEIPYQEASSSGATSITFKKAVLGLTVTPNITPDGQIIMTVKINRDTPIDCTVDSLTTKCINTKHLNT
QAMVEDGGTLIVGGIYEEESTNAVNKVPVLGDIPVVGNLFKSRGKRENRRELLIFITPRIMDNVGNNLRY

Nucleotide


Download         Length: 2133 bp        

>NTDB_id=558178 KCG51_RS10030 WP_250580891.1 2123681..2125813(-) (pilQ) [Neisseria subflava strain HP0069]
ATGAAAACCAAGCACATGACAAAATTATTTGCCGGCTTCAGCGTTGCCCTCGCTGTTCAGACGGCCTTTGCAGGCAATAT
TACCGATATCAACGTTTCCACTTTGCCTGACAACCAAAAAATCATCAAAATCCGTTTCGACAAAGACGTCACCACACCTC
ATGGTTTTGTAACATCTACTCCGGCGCGTATCGCATTGGATTTTGCCAATACCAATATCCGTTTGCCTCAGCCTGTTTTG
GAATATGCCGACCCATTGCTGAATCAAATTACTGCGGCACAAAACAATGACCGCGCACGCGTGGTTTTGGGCTTGAATAA
AATCAGCCAATACAATACTGAGATTCGCGGCAACGAAGTTTGGGTATTTGTAAACGAATCTACTGATCAAACCAATGCGG
CCGTTGCAAATGAACGTGCGGCTACGCCGTCAACTGCGCGCGCTGCTCAGACTTATCAAGCTGTTTCAGCAGCCAATATC
GATTTCCGCAAAGGCGCACGCAATTCCGGCATTATTGAATTGTCCGCCCCTGGTTTCAGCGGACAGCCGGATATTAAACA
GCAGCGCGACCGCGTGGTTGTGACATTGAAAAACCATACGCTGCCGACACAAGCGCAACGCAGTTTGGATGTGGCTGACT
TCAATACCCCTGTACAAAACGTTACGCTTAAACGTATCGGCAATTCTACCCAGCTTATTATCCGCAACAATAATGCGAAT
TGGGACATCAATACCAAAGCCTCTTCCGGCCGTTTTGTATTTGAAGTATCGCCTAAAGCCGCCAATACCGAATCCAGCGG
CTTGAACCACAATGAGAACAAATCGTTCAAAGGCCGTAAAATTTCTTTGGATTTCCAAGATGTAGAAGTTCGTACCATCT
TGCAGATTTTGGCGAAAGAATCCGGCGTGAATATTGTTGCCAGCGATACCGTCAAAGGCACCATGACTTTGTCCCTGAAA
GATGTACCTTGGGATCAGGCTTTGGATTTGGTTATGCAGGCGCGCAATTTGGATATGCGCCGTCAAGGCAACATCATTAA
TATTGCGCCTCGCGATGAATTGTTGGCAAAAGACAAAGCCTTCTTGCAGGCTGAAAAAGAGATTGCCGAATTGGGTCCGC
TGTATTCTCAAACCTTCCAGTTGAAATACAAAAATGTGGAAGAGTTCCGCAAAATTCTGCGTCTGGAAGAATATGACAGC
AATAATTCCAATACCCGCAATACTCTGTTGAGCAACCGAGGCAGTGCCTTAATCGATCCGGCCACCAATACGCTGATCGT
GACCGACAACCGCGGCGTGATTGAGAAATTCCGCAAACTGATTGATGAATTGGATGTTCCAACCCGTCAAGTAATGGTGG
AAGCGCGTATTGTGGAAGCTGAAGATACCTTCTTCCGCAACTTGGGCGTTAAATTCGGTTCCGGTGGTGCAAGTGGCCGT
AACGCATGGGGCAGCAACTGGAGCAATGCACAAACCAACTACAATACCAATGCCTCGTTTAACCGTGGCGATGTAGGCTA
CCGCACATGGACTTTGGATCCGAACGTCAGTCTGCCGACCGCAGCCGCAGTCAACAGCATTGCGCTGGTGCGTGCGTTCT
CGTCCGGCGCATTGGGCTTGGAAATCAGCGCGTCTGAAGAACAAGGTAAGAGCAAAACCATTTCCAATCCGCGCGTGCTG
ACACAAGACCGCAAAGAAGCCAAAATTGAATCCGGTACGGAAATTCCTTACCAAGAGGCTTCTTCCAGCGGTGCGACTTC
GATTACCTTTAAGAAAGCCGTTTTGGGCTTGACCGTAACGCCGAACATTACGCCTGACGGTCAAATCATCATGACTGTGA
AGATTAATCGCGATACCCCGATCGACTGTACCGTAGATTCTCTGACAACCAAGTGTATCAACACCAAACACTTGAATACC
CAAGCCATGGTCGAAGATGGCGGCACGCTGATTGTCGGCGGTATTTACGAAGAAGAAAGCACCAATGCAGTGAACAAAGT
CCCTGTTTTGGGCGATATTCCTGTTGTCGGCAATCTGTTCAAATCACGCGGCAAACGTGAAAACCGCCGTGAGCTGTTGA
TCTTCATCACGCCGCGCATTATGGATAATGTGGGTAACAATCTGCGTTACTGA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(303-350)

Bacterial type II/III secretion system short domain (Secretin_N)

(377-450)

AMIN domain (AMIN)

(38-115)

Bacterial type II and III secretion system protein (Secretin)

(545-702)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Neisseria meningitidis M1080

61.161

100

0.668
  pilQ Neisseria meningitidis MC58

60.536

100

0.668
  pilQ Neisseria gonorrhoeae strain FA1090

64.043

100

0.665