Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   KCG51_RS10045 Genome accession   NZ_CP073119
Coordinates   2127063..2127686 (-) Length   207 a.a.
NCBI ID   WP_250580892.1    Uniprot ID   -
Organism   Neisseria subflava strain HP0069     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2122063..2132686
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG51_RS10025 (KCG51_10055) - 2123036..2123548 (-) 513 WP_283255400.1 shikimate kinase -
  KCG51_RS10030 (KCG51_10060) pilQ 2123681..2125813 (-) 2133 WP_250580891.1 type IV pilus secretin PilQ Machinery gene
  KCG51_RS10035 (KCG51_10065) pilP 2125834..2126376 (-) 543 WP_003684527.1 pilus assembly protein PilP Machinery gene
  KCG51_RS10040 (KCG51_10070) pilO 2126392..2127063 (-) 672 WP_004520855.1 type 4a pilus biogenesis protein PilO -
  KCG51_RS10045 (KCG51_10075) pilN 2127063..2127686 (-) 624 WP_250580892.1 PilN domain-containing protein Machinery gene
  KCG51_RS10050 (KCG51_10080) pilM 2127691..2128782 (-) 1092 WP_250580893.1 type IV pilus assembly protein PilM -
  KCG51_RS10055 (KCG51_10085) - 2128936..2131332 (+) 2397 WP_254342517.1 penicillin-binding protein 1A -
  KCG51_RS10060 (KCG51_10090) - 2131398..2132234 (+) 837 WP_250580895.1 PHP domain-containing protein -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23030.23 Da        Isoelectric Point: 4.7171

>NTDB_id=558180 KCG51_RS10045 WP_250580892.1 2127063..2127686(-) (pilN) [Neisseria subflava strain HP0069]
MIELTRINLLPYREEIKQRKQQQFKILMLGAFAVGLGLAAATYLGIDSAISNQEGRNNFLQTEIDRLDRELGEIDKLQQE
KEAFLAKKLKVEELQEKRYQAAYILDSLNALTPDNTYLTALEAESPTSYKISGHAISDNKIAVMMRSLPSTGIFLQPELL
SIKKVDNYQEFTLKSSINQVNTPAPALTAQSSGETAEPVAEPAPEAQ

Nucleotide


Download         Length: 624 bp        

>NTDB_id=558180 KCG51_RS10045 WP_250580892.1 2127063..2127686(-) (pilN) [Neisseria subflava strain HP0069]
ATGATCGAATTAACCAGAATCAACCTTCTTCCGTATCGGGAAGAGATTAAACAGCGCAAGCAGCAGCAATTCAAAATATT
GATGCTTGGCGCTTTTGCAGTGGGTTTGGGCTTGGCGGCCGCTACCTATCTCGGTATTGACAGCGCCATTAGCAATCAAG
AGGGCCGCAACAACTTCCTGCAAACCGAAATTGACAGACTTGATAGAGAATTGGGCGAAATCGATAAACTTCAGCAAGAA
AAAGAAGCCTTCTTGGCCAAGAAGCTGAAAGTTGAAGAGTTGCAGGAAAAACGCTATCAAGCGGCTTATATCCTTGATTC
TTTGAATGCGCTTACGCCCGATAATACTTATTTGACTGCATTGGAAGCAGAAAGCCCGACCAGCTATAAAATCAGCGGCC
ATGCCATCAGCGACAATAAAATCGCCGTGATGATGCGCTCCCTGCCAAGTACAGGTATTTTCTTGCAACCTGAATTGTTG
AGCATTAAAAAAGTAGATAACTACCAAGAATTTACTTTGAAATCTTCAATCAACCAAGTGAATACGCCGGCTCCTGCACT
GACTGCCCAAAGCAGCGGTGAAACGGCCGAACCTGTGGCAGAACCTGCTCCGGAGGCTCAATAA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(104-176)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Neisseria meningitidis strain C311

56.345

95.169

0.536