Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   KCG51_RS08805 Genome accession   NZ_CP073119
Coordinates   1863640..1863927 (-) Length   95 a.a.
NCBI ID   WP_254342441.1    Uniprot ID   -
Organism   Neisseria subflava strain HP0069     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1858640..1868927
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG51_RS08785 (KCG51_08810) thiL 1859091..1860047 (-) 957 WP_250580631.1 thiamine-phosphate kinase -
  KCG51_RS08790 (KCG51_08815) - 1860235..1860954 (-) 720 WP_250580633.1 SDR family oxidoreductase -
  KCG51_RS08795 (KCG51_08820) hpnE 1861050..1862357 (-) 1308 WP_250580635.1 hydroxysqualene dehydroxylase HpnE -
  KCG51_RS08800 (KCG51_08825) hpnD 1862354..1863202 (-) 849 WP_250580642.1 presqualene diphosphate synthase HpnD -
  KCG51_RS10820 (KCG51_08830) comP 1863343..1863453 (-) 111 WP_349306325.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  KCG51_RS08805 (KCG51_08835) comE 1863640..1863927 (-) 288 WP_254342441.1 helix-hairpin-helix domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 9833.56 Da        Isoelectric Point: 10.4923

>NTDB_id=558175 KCG51_RS08805 WP_254342441.1 1863640..1863927(-) (comE) [Neisseria subflava strain HP0069]
MKKFLFGVFAAVCAAFSLAAVNINIASSAELETLPGIGPAKAKSIVEYRQKNGAFKSVEELKNVKGIGDAVLNKLKAEAT
VSSAAPKAAQPAVKK

Nucleotide


Download         Length: 288 bp        

>NTDB_id=558175 KCG51_RS08805 WP_254342441.1 1863640..1863927(-) (comE) [Neisseria subflava strain HP0069]
ATGAAGAAATTTTTATTTGGTGTATTTGCCGCCGTCTGTGCGGCGTTCTCTTTGGCCGCTGTGAACATCAACATCGCGTC
TTCTGCCGAACTGGAGACCTTGCCGGGTATCGGCCCGGCTAAGGCGAAATCGATTGTGGAATACCGTCAGAAGAACGGTG
CGTTCAAATCGGTGGAGGAGCTGAAAAACGTGAAGGGCATCGGTGATGCGGTGCTGAACAAGTTGAAGGCGGAGGCGACG
GTTTCTTCTGCCGCGCCTAAGGCCGCACAGCCTGCCGTGAAAAAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(20-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

63

100

0.663
  comE Neisseria gonorrhoeae MS11

63

100

0.663
  comE Neisseria gonorrhoeae MS11

63

100

0.663
  comE Neisseria gonorrhoeae MS11

63

100

0.663
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

52.439

86.316

0.453
  comEA Vibrio parahaemolyticus RIMD 2210633

44.186

90.526

0.4