Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   KCG55_RS10475 Genome accession   NZ_CP073117
Coordinates   2199415..2199960 (+) Length   181 a.a.
NCBI ID   WP_254322998.1    Uniprot ID   -
Organism   Neisseria subflava strain HP0015     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2194415..2204960
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG55_RS10450 (KCG55_10525) - 2194868..2195449 (-) 582 WP_254322994.1 superoxide dismutase -
  KCG55_RS10455 (KCG55_10530) dnaB 2195604..2197010 (+) 1407 WP_036493702.1 replicative DNA helicase -
  KCG55_RS10460 (KCG55_10535) pilH 2197167..2197832 (+) 666 WP_254322995.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  KCG55_RS10465 (KCG55_10540) pilV 2197848..2198498 (+) 651 WP_254322996.1 type IV pilus modification protein PilV -
  KCG55_RS10470 (KCG55_10545) pilJ 2198501..2199436 (+) 936 WP_254322997.1 pilus assembly protein PilW Machinery gene
  KCG55_RS10475 (KCG55_10550) pilK 2199415..2199960 (+) 546 WP_254322998.1 pilus assembly protein Machinery gene
  KCG55_RS10480 (KCG55_10555) pilL 2199965..2200453 (+) 489 WP_254322999.1 PilX family type IV pilin Machinery gene
  KCG55_RS10485 (KCG55_10560) - 2200506..2201126 (-) 621 WP_254323000.1 Smr/MutS family protein -
  KCG55_RS10490 (KCG55_10565) - 2201263..2201640 (+) 378 WP_254323001.1 hypothetical protein -
  KCG55_RS10495 (KCG55_10570) trpE 2201776..2203251 (+) 1476 WP_254323002.1 anthranilate synthase component I -
  KCG55_RS10500 (KCG55_10575) - 2203296..2203865 (+) 570 WP_254323003.1 RNA 2'-phosphotransferase -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 20176.00 Da        Isoelectric Point: 8.7685

>NTDB_id=558139 KCG55_RS10475 WP_254322998.1 2199415..2199960(+) (pilK) [Neisseria subflava strain HP0015]
MRRPITLNKPDRQQGYALFIVLMIMVVIALLVVTATQSYNTEQRISTNDADRKLATTLAEAALREGENQIFDIEGKKTTF
TAKCEKGLCSTPNVKSNGDFTEEGNPTVDAWKRKCDKSLCIDANGTEYPLDKKSGIVNNPRYIIEYLGKTTEGRITYRVT
AKAWGKNANTQVVLQSYVASE

Nucleotide


Download         Length: 546 bp        

>NTDB_id=558139 KCG55_RS10475 WP_254322998.1 2199415..2199960(+) (pilK) [Neisseria subflava strain HP0015]
ATGCGCCGACCGATCACTCTAAACAAACCTGACCGGCAGCAAGGCTATGCTTTGTTTATCGTCTTAATGATAATGGTCGT
CATCGCACTGCTCGTGGTCACAGCCACCCAGTCCTATAATACCGAACAGCGTATCAGCACCAATGATGCCGACCGTAAAC
TGGCAACCACCCTAGCCGAAGCGGCACTGCGTGAAGGTGAAAATCAAATTTTTGATATTGAAGGTAAAAAGACTACTTTT
ACCGCAAAATGTGAAAAAGGTTTATGTTCCACACCAAACGTCAAATCCAATGGCGATTTTACTGAAGAAGGCAACCCAAC
CGTAGATGCTTGGAAGCGCAAATGCGACAAAAGCCTGTGTATTGACGCCAATGGTACGGAATATCCTTTAGATAAAAAAA
GCGGCATCGTAAATAATCCACGCTACATCATCGAATATTTGGGTAAAACGACAGAGGGTCGAATTACCTATCGCGTTACT
GCCAAGGCATGGGGTAAGAATGCCAATACCCAAGTCGTTCTTCAGTCTTACGTTGCCAGCGAATAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilX C-term (PilX)

(101-179)

PilX N-terminal (PilX_N)

(14-64)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

56.436

100

0.63