Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KCG55_RS08180 Genome accession   NZ_CP073117
Coordinates   1704856..1705383 (+) Length   175 a.a.
NCBI ID   WP_049328678.1    Uniprot ID   -
Organism   Neisseria subflava strain HP0015     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1699856..1710383
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG55_RS08160 (KCG55_08240) rbfA 1700507..1700878 (-) 372 WP_003685554.1 30S ribosome-binding factor RbfA -
  KCG55_RS08165 (KCG55_08245) ppx 1700966..1702474 (-) 1509 WP_254322705.1 exopolyphosphatase -
  KCG55_RS08170 (KCG55_08250) - 1702647..1703270 (+) 624 WP_254322706.1 lytic transglycosylase domain-containing protein -
  KCG55_RS08175 (KCG55_08255) - 1703472..1704854 (+) 1383 WP_003685608.1 MFS transporter -
  KCG55_RS08180 (KCG55_08260) ssb 1704856..1705383 (+) 528 WP_049328678.1 single-stranded DNA-binding protein Machinery gene
  KCG55_RS08185 (KCG55_08265) - 1705458..1706165 (-) 708 WP_254322707.1 SIMPL domain-containing protein -
  KCG55_RS08190 (KCG55_08270) - 1706278..1706769 (-) 492 WP_254322708.1 DUF1841 family protein -
  KCG55_RS08195 (KCG55_08275) ftsB 1706874..1707149 (-) 276 WP_254322709.1 cell division protein FtsB -
  KCG55_RS08200 (KCG55_08280) eno 1707173..1708459 (-) 1287 WP_254322710.1 phosphopyruvate hydratase -
  KCG55_RS08205 (KCG55_08285) - 1708500..1708658 (-) 159 WP_254322711.1 hypothetical protein -
  KCG55_RS08210 (KCG55_08290) argB 1708721..1709608 (-) 888 WP_049328699.1 acetylglutamate kinase -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19535.56 Da        Isoelectric Point: 5.7974

>NTDB_id=558130 KCG55_RS08180 WP_049328678.1 1704856..1705383(+) (ssb) [Neisseria subflava strain HP0015]
MSLNKVILIGRLGRDPEVRYMPNGEAVCNFSVATSETWNDRNGQRVERTEWHNITMYRKLAEIAGQYLRKGSQVYLEGRI
QSRKYQGKDGIERTAYDIIANEMKMLGSRNDNSGGAPYDDGYNQGGHSSQGSYQQAPQQQYQSAPAQEPPAAPARRPAPA
QPTAPVDDIDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=558130 KCG55_RS08180 WP_049328678.1 1704856..1705383(+) (ssb) [Neisseria subflava strain HP0015]
ATGTCATTGAATAAAGTTATCCTCATCGGCCGCCTCGGCCGCGACCCGGAAGTCCGTTATATGCCCAACGGCGAGGCCGT
CTGTAACTTCAGCGTTGCCACCAGTGAAACGTGGAACGACCGCAACGGTCAGCGCGTAGAACGTACTGAATGGCACAACA
TCACCATGTACCGCAAACTCGCCGAAATCGCCGGTCAATACCTGCGTAAAGGCAGCCAAGTGTACCTGGAAGGCCGTATC
CAAAGCCGCAAATACCAAGGCAAAGACGGCATCGAGCGCACCGCTTACGACATCATTGCCAATGAGATGAAAATGCTCGG
CAGCCGTAACGACAACAGCGGCGGCGCACCATACGATGACGGCTACAACCAAGGCGGCCATTCAAGCCAAGGCAGTTACC
AACAAGCGCCACAACAGCAATACCAATCTGCTCCGGCTCAAGAACCTCCAGCCGCCCCAGCCCGTCGTCCTGCCCCGGCA
CAACCGACCGCTCCGGTTGATGATATTGACGACGATATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria gonorrhoeae MS11

81.111

100

0.834
  ssb Neisseria meningitidis MC58

80.556

100

0.829
  ssb Vibrio cholerae strain A1552

50

100

0.509
  ssb Glaesserella parasuis strain SC1401

46.774

100

0.497