Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   KCG55_RS06365 Genome accession   NZ_CP073117
Coordinates   1321002..1321415 (+) Length   137 a.a.
NCBI ID   WP_254323645.1    Uniprot ID   -
Organism   Neisseria subflava strain HP0015     
Function   DNA binding; DNA uptake; receptor of DNA uptake sequence (DUS) (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1316002..1326415
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG55_RS06360 (KCG55_06440) comE 1320452..1320739 (+) 288 WP_254322411.1 helix-hairpin-helix domain-containing protein Machinery gene
  KCG55_RS06365 (KCG55_06445) comP 1321002..1321415 (+) 414 WP_254323645.1 type IV pilin protein Machinery gene
  KCG55_RS06370 (KCG55_06450) - 1321488..1322312 (-) 825 WP_070713410.1 undecaprenyl-diphosphate phosphatase -
  KCG55_RS06375 (KCG55_06455) dsbA1 1322357..1322998 (-) 642 WP_254322412.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  KCG55_RS06380 (KCG55_06460) - 1323010..1324089 (-) 1080 WP_254322413.1 SPOR domain-containing protein -
  KCG55_RS06385 (KCG55_06465) comM 1324244..1325740 (-) 1497 WP_254322414.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  KCG55_RS06390 (KCG55_06470) - 1325754..1326074 (-) 321 WP_003684455.1 accessory factor UbiK family protein -

Sequence

Protein


Download         Length: 137 a.a.        Molecular weight: 15024.49 Da        Isoelectric Point: 9.6523

>NTDB_id=558123 KCG55_RS06365 WP_254323645.1 1321002..1321415(+) (comP) [Neisseria subflava strain HP0015]
MLVVSILATVAFTAYRESVRSANLRAAHAALLENARFMEQFYTKKGSFKLTSTKWPELPVKEAGGFCIRMSGQAKGILEG
KFTLKAVALDREAEPRVLRLNESLTAVVCGKMKGKGSCTDGEEIFRGNDAECRPFMG

Nucleotide


Download         Length: 414 bp        

>NTDB_id=558123 KCG55_RS06365 WP_254323645.1 1321002..1321415(+) (comP) [Neisseria subflava strain HP0015]
ATGCTGGTGGTTTCGATCTTGGCGACGGTGGCATTTACGGCCTATCGGGAATCGGTCCGCTCGGCCAACCTGCGCGCGGC
GCATGCCGCCCTGCTGGAAAATGCGCGCTTTATGGAGCAGTTCTATACGAAAAAGGGCAGCTTTAAGCTGACGTCGACGA
AGTGGCCGGAGTTGCCGGTCAAGGAGGCGGGCGGTTTCTGTATCAGGATGAGCGGCCAGGCTAAGGGGATCTTGGAGGGG
AAGTTTACTTTGAAGGCGGTGGCGCTGGATAGGGAGGCGGAACCGAGGGTATTGCGCTTGAATGAGTCGCTGACGGCGGT
GGTGTGCGGGAAGATGAAGGGGAAGGGAAGCTGTACGGACGGTGAGGAGATATTTAGGGGTAATGATGCGGAGTGTCGGC
CTTTTATGGGGTAG

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(14-93)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Neisseria subflava NJ9703

96.35

100

0.964
  comP Neisseria meningitidis 8013

50.37

98.54

0.496
  comP Neisseria gonorrhoeae MS11

50.376

97.08

0.489