Detailed information    

insolico Bioinformatically predicted

Overview

Name   dsbA1   Type   Machinery gene
Locus tag   KCG55_RS06375 Genome accession   NZ_CP073117
Coordinates   1322357..1322998 (-) Length   213 a.a.
NCBI ID   WP_254322412.1    Uniprot ID   -
Organism   Neisseria subflava strain HP0015     
Function   DNA binding and uptake; interact with PilQ (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1317357..1327998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG55_RS06360 (KCG55_06440) comE 1320452..1320739 (+) 288 WP_254322411.1 helix-hairpin-helix domain-containing protein Machinery gene
  KCG55_RS06365 (KCG55_06445) comP 1321002..1321415 (+) 414 WP_254323645.1 type IV pilin protein Machinery gene
  KCG55_RS06370 (KCG55_06450) - 1321488..1322312 (-) 825 WP_070713410.1 undecaprenyl-diphosphate phosphatase -
  KCG55_RS06375 (KCG55_06455) dsbA1 1322357..1322998 (-) 642 WP_254322412.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  KCG55_RS06380 (KCG55_06460) - 1323010..1324089 (-) 1080 WP_254322413.1 SPOR domain-containing protein -
  KCG55_RS06385 (KCG55_06465) comM 1324244..1325740 (-) 1497 WP_254322414.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  KCG55_RS06390 (KCG55_06470) - 1325754..1326074 (-) 321 WP_003684455.1 accessory factor UbiK family protein -
  KCG55_RS06395 (KCG55_06475) - 1326200..1327264 (-) 1065 WP_254322416.1 DUF1176 domain-containing protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23813.63 Da        Isoelectric Point: 9.8825

>NTDB_id=558124 KCG55_RS06375 WP_254322412.1 1322357..1322998(-) (dsbA1) [Neisseria subflava strain HP0015]
MKQRIKQTIAALSLSLFGLSAQAATEGVDYTVLSRPIPQQQAGKIEVLEFFGYFCVHCYHLDPVLLQHSKTFAKDVSLRT
EHVVWMPEMLGLAKVAAAVNLSGLKYQANPVIFKAVYEQKINLADTNVFRSWVDKQTGFDSKKLLQAYNSPAAALAAAKM
QQLTETYRIENTPTVIVGGKYKVNFNSTDWKAGMKTIDELIVKVRREQSSKPL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=558124 KCG55_RS06375 WP_254322412.1 1322357..1322998(-) (dsbA1) [Neisseria subflava strain HP0015]
ATGAAGCAGCGTATAAAACAAACCATTGCCGCACTCAGCCTGAGCCTGTTCGGACTGAGTGCGCAAGCTGCTACCGAAGG
TGTGGACTATACTGTTCTTAGTCGTCCTATTCCGCAGCAACAAGCCGGCAAAATTGAAGTACTTGAGTTTTTCGGCTACT
TCTGCGTTCATTGTTACCATCTCGATCCAGTTTTGTTGCAACACAGCAAAACCTTCGCTAAAGATGTTTCCTTACGGACA
GAGCACGTCGTTTGGATGCCTGAAATGTTGGGTTTGGCCAAAGTTGCCGCAGCCGTCAATCTTTCAGGTTTAAAATATCA
AGCCAATCCAGTCATCTTCAAAGCAGTTTACGAACAAAAAATCAACCTGGCCGATACCAATGTATTCCGATCATGGGTGG
ATAAACAGACAGGTTTTGACAGTAAAAAACTGCTTCAAGCCTACAACAGTCCTGCTGCCGCATTGGCTGCTGCAAAAATG
CAGCAATTGACGGAAACTTATCGAATTGAAAACACACCAACTGTCATCGTCGGTGGTAAATACAAAGTCAATTTCAACAG
TACCGACTGGAAAGCCGGTATGAAAACCATAGACGAGCTCATCGTCAAAGTCCGCCGCGAACAATCCTCAAAACCACTTT
AA

Domains

Predicted by InterproScan.

Thioredoxin (Thioredoxin_4)

(44-184)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dsbA1 Neisseria meningitidis MC58

59.358

87.793

0.521
  dsbA2 Neisseria meningitidis MC58

59.239

86.385

0.512