Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   KCG56_RS09465 Genome accession   NZ_CP073116
Coordinates   1937675..1937962 (-) Length   95 a.a.
NCBI ID   WP_036472233.1    Uniprot ID   A0A4D7WS56
Organism   Neisseria subflava strain TT0073     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1932675..1942962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG56_RS09440 (KCG56_09490) - 1933194..1933697 (+) 504 WP_049336347.1 hypothetical protein -
  KCG56_RS09445 (KCG56_09495) - 1933912..1934775 (-) 864 WP_070589171.1 GNAT family N-acetyltransferase -
  KCG56_RS09450 (KCG56_09500) - 1935050..1935715 (-) 666 WP_070589173.1 hypothetical protein -
  KCG56_RS09455 (KCG56_09505) pyrI 1935908..1936366 (-) 459 WP_003684689.1 aspartate carbamoyltransferase regulatory subunit -
  KCG56_RS09460 (KCG56_09510) pyrB 1936377..1937297 (-) 921 WP_254321249.1 aspartate carbamoyltransferase -
  KCG56_RS09465 (KCG56_09515) comE 1937675..1937962 (-) 288 WP_036472233.1 helix-hairpin-helix domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 9763.42 Da        Isoelectric Point: 10.4923

>NTDB_id=558088 KCG56_RS09465 WP_036472233.1 1937675..1937962(-) (comE) [Neisseria subflava strain TT0073]
MKKFLFGAFAAVCAAFSLAAVNINTASSAELEALPGIGPAKAKSIVEYRQKNGAFKSVEELKNVKGIGDAVLNKLKAEAT
VSSAAPKAAQPAVKK

Nucleotide


Download         Length: 288 bp        

>NTDB_id=558088 KCG56_RS09465 WP_036472233.1 1937675..1937962(-) (comE) [Neisseria subflava strain TT0073]
ATGAAGAAATTTTTATTTGGTGCATTTGCTGCCGTTTGTGCGGCGTTCTCTTTGGCTGCCGTGAACATCAATACTGCGTC
TTCTGCTGAACTGGAGGCTTTGCCGGGTATCGGCCCGGCTAAGGCAAAATCGATTGTGGAATACCGTCAGAAGAACGGTG
CGTTCAAATCGGTGGAGGAGCTGAAAAACGTGAAGGGCATCGGTGATGCGGTGCTGAACAAGTTGAAGGCGGAGGCAACG
GTTTCTTCTGCCGCGCCTAAGGCCGCACAGCCTGCCGTGAAAAAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(20-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4D7WS56

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

62.626

100

0.653
  comE Neisseria gonorrhoeae MS11

62.626

100

0.653
  comE Neisseria gonorrhoeae MS11

62.626

100

0.653
  comE Neisseria gonorrhoeae MS11

62.626

100

0.653
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

54.321

85.263

0.463
  comEA Vibrio parahaemolyticus RIMD 2210633

44.186

90.526

0.4