Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   KCG56_RS06640 Genome accession   NZ_CP073116
Coordinates   1394198..1394485 (-) Length   95 a.a.
NCBI ID   WP_254320953.1    Uniprot ID   A0A9X9N2Y8
Organism   Neisseria subflava strain TT0073     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1389198..1399485
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG56_RS06620 (KCG56_06700) thiL 1389653..1390609 (-) 957 WP_254320950.1 thiamine-phosphate kinase -
  KCG56_RS06625 (KCG56_06705) - 1390795..1391514 (-) 720 WP_003682583.1 SDR family oxidoreductase -
  KCG56_RS06630 (KCG56_06710) hpnE 1391610..1392917 (-) 1308 WP_254320951.1 hydroxysqualene dehydroxylase HpnE -
  KCG56_RS06635 (KCG56_06715) hpnD 1392914..1393762 (-) 849 WP_254320952.1 presqualene diphosphate synthase HpnD -
  KCG56_RS06640 (KCG56_06720) comE 1394198..1394485 (-) 288 WP_254320953.1 helix-hairpin-helix domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 9749.40 Da        Isoelectric Point: 10.4923

>NTDB_id=558079 KCG56_RS06640 WP_254320953.1 1394198..1394485(-) (comE) [Neisseria subflava strain TT0073]
MKKFLFGAFAAVCAAFSLAAVNINTASSAELEALPGIGPAKAKSIVEYRQKNGAFKSVEDLKNVKGIGDAVLNKLKAEAT
VSSAAPKAAQPAVKK

Nucleotide


Download         Length: 288 bp        

>NTDB_id=558079 KCG56_RS06640 WP_254320953.1 1394198..1394485(-) (comE) [Neisseria subflava strain TT0073]
ATGAAGAAATTTTTATTTGGTGCATTTGCTGCCGTTTGTGCGGCGTTCTCTTTGGCTGCCGTGAACATCAATACTGCGTC
TTCTGCCGAACTGGAGGCCTTGCCGGGTATCGGCCCGGCTAAGGCGAAATCGATTGTGGAATACCGTCAGAAGAACGGTG
CGTTCAAATCGGTGGAGGATCTGAAAAACGTGAAGGGCATCGGTGATGCGGTGCTGAACAAGTTGAAGGCGGAGGCGACG
GTTTCTTCTGCCGCGCCTAAGGCCGCACAGCCTGCCGTGAAAAAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(20-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

63.636

100

0.663
  comE Neisseria gonorrhoeae MS11

63.636

100

0.663
  comE Neisseria gonorrhoeae MS11

63.636

100

0.663
  comE Neisseria gonorrhoeae MS11

63.636

100

0.663
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

54.878

86.316

0.474
  comEA Vibrio parahaemolyticus RIMD 2210633

45.349

90.526

0.411