Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KCG56_RS02650 Genome accession   NZ_CP073116
Coordinates   540696..541223 (+) Length   175 a.a.
NCBI ID   WP_254321815.1    Uniprot ID   A0A9X9HZ93
Organism   Neisseria subflava strain TT0073     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 535696..546223
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG56_RS02630 (KCG56_02640) rbfA 536345..536716 (-) 372 WP_003685554.1 30S ribosome-binding factor RbfA -
  KCG56_RS02635 (KCG56_02645) ppx 536804..538312 (-) 1509 WP_003685647.1 exopolyphosphatase -
  KCG56_RS02640 (KCG56_02650) - 538486..539109 (+) 624 WP_039863563.1 lytic transglycosylase domain-containing protein -
  KCG56_RS02645 (KCG56_02655) - 539312..540694 (+) 1383 WP_254321814.1 MFS transporter -
  KCG56_RS02650 (KCG56_02660) ssb 540696..541223 (+) 528 WP_254321815.1 single-stranded DNA-binding protein Machinery gene
  KCG56_RS02655 (KCG56_02665) - 541492..544335 (+) 2844 WP_254321816.1 DEAD/DEAH box helicase family protein -
  KCG56_RS02660 (KCG56_02670) - 544338..545159 (+) 822 WP_254321817.1 restriction endonuclease subunit S -
  KCG56_RS02665 (KCG56_02675) - 545147..545749 (+) 603 WP_254321818.1 restriction endonuclease subunit S -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19562.59 Da        Isoelectric Point: 5.7974

>NTDB_id=558067 KCG56_RS02650 WP_254321815.1 540696..541223(+) (ssb) [Neisseria subflava strain TT0073]
MSLNKVILIGRLGRDPEVRYMPNGEAVCNFSVATSETWNDRNGQRVERTEWHNITMYRKLAEIAGQYLRKGSQVYLEGRI
QSRKYQGKDGIERTAYDIIANEMKMLGGRNDNSGGAPYDDGYNQGGHSSQSNYQQAPQQQYQSAPAQEPPAAPARRPAPA
QPTAPVDDIDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=558067 KCG56_RS02650 WP_254321815.1 540696..541223(+) (ssb) [Neisseria subflava strain TT0073]
ATGTCATTGAATAAAGTTATCCTCATCGGCCGCCTCGGCCGCGACCCGGAAGTCCGCTATATGCCCAACGGCGAGGCCGT
CTGTAACTTCAGCGTTGCCACCAGCGAAACGTGGAACGACCGTAACGGCCAACGCGTAGAACGTACCGAATGGCACAACA
TCACCATGTACCGCAAACTCGCCGAAATCGCCGGTCAATACCTGCGTAAAGGCAGCCAAGTGTATCTGGAAGGCCGTATC
CAAAGCCGTAAATACCAAGGCAAAGACGGCATCGAGCGAACCGCTTACGACATTATCGCCAACGAAATGAAAATGCTCGG
CGGCCGCAACGACAACAGCGGCGGCGCACCATACGATGACGGCTACAACCAAGGCGGTCATTCGAGCCAAAGCAATTACC
AACAAGCGCCACAACAGCAATACCAATCTGCCCCGGCCCAAGAACCTCCAGCCGCCCCAGCCCGTCGTCCTGCCCCGGCA
CAACCGACCGCTCCGGTTGATGATATCGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria gonorrhoeae MS11

81.667

100

0.84
  ssb Neisseria meningitidis MC58

81.111

100

0.834
  ssb Glaesserella parasuis strain SC1401

47.312

100

0.503
  ssb Vibrio cholerae strain A1552

49.438

100

0.503