Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KCG54_RS07100 Genome accession   NZ_CP073115
Coordinates   1463577..1464104 (-) Length   175 a.a.
NCBI ID   WP_254323803.1    Uniprot ID   A0A9X9N0G0
Organism   Neisseria subflava strain TT0077     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1458577..1469104
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG54_RS07070 (KCG54_07120) - 1459566..1460360 (+) 795 WP_254323802.1 polyamine aminopropyltransferase -
  KCG54_RS07075 (KCG54_07125) - 1460402..1461039 (+) 638 Protein_1384 alpha/beta hydrolase -
  KCG54_RS07080 (KCG54_07130) - 1461169..1461705 (-) 537 WP_049331539.1 NUDIX hydrolase -
  KCG54_RS07085 (KCG54_07135) - 1461791..1462438 (-) 648 WP_250579449.1 nuclease-related domain-containing protein -
  KCG54_RS07090 (KCG54_07140) folB 1462484..1462834 (-) 351 WP_063075429.1 dihydroneopterin aldolase -
  KCG54_RS07095 (KCG54_07145) plsY 1462892..1463503 (+) 612 WP_063075428.1 glycerol-3-phosphate 1-O-acyltransferase PlsY -
  KCG54_RS07100 (KCG54_07150) ssb 1463577..1464104 (-) 528 WP_254323803.1 single-stranded DNA-binding protein Machinery gene
  KCG54_RS07105 (KCG54_07155) - 1464106..1465488 (-) 1383 WP_070461587.1 MFS transporter -
  KCG54_RS07110 (KCG54_07160) - 1465679..1466302 (-) 624 WP_101755603.1 lytic transglycosylase domain-containing protein -
  KCG54_RS07115 (KCG54_07165) ppx 1466476..1467984 (+) 1509 WP_254323804.1 exopolyphosphatase -
  KCG54_RS07120 (KCG54_07170) rbfA 1468072..1468443 (+) 372 WP_003685554.1 30S ribosome-binding factor RbfA -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19563.62 Da        Isoelectric Point: 5.7974

>NTDB_id=558042 KCG54_RS07100 WP_254323803.1 1463577..1464104(-) (ssb) [Neisseria subflava strain TT0077]
MSLNKVILIGRLGRDPEVRYMPNGEAVCNFSVATSETWNDRNGQRVERTEWHNITMYRKLAEIAGQYLRKGSQVYLEGRI
QSRKYQGKDGIERTAYDIIANEMKMLGGRNDNSGGAPYDDGYNQGGHSSQSSYQQVPQQQYQSAPAQEPPAAPARRPAPA
QPTAPVDDIDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=558042 KCG54_RS07100 WP_254323803.1 1463577..1464104(-) (ssb) [Neisseria subflava strain TT0077]
ATGTCATTGAATAAAGTTATCCTCATCGGCCGTCTCGGCCGCGACCCGGAAGTCCGCTATATGCCCAACGGCGAGGCCGT
CTGTAACTTCAGCGTTGCCACCAGCGAAACGTGGAATGACCGTAACGGCCAACGCGTAGAACGTACCGAATGGCACAACA
TCACCATGTACCGCAAACTCGCCGAAATCGCCGGTCAATACCTGCGTAAAGGCAGCCAAGTGTACCTGGAAGGCCGTATC
CAAAGTCGTAAATACCAAGGCAAAGACGGCATCGAGCGCACCGCTTACGACATTATCGCCAACGAAATGAAAATGCTCGG
CGGTCGCAACGACAACAGCGGCGGCGCACCATACGATGACGGCTACAACCAAGGAGGTCATTCAAGCCAAAGCAGCTACC
AACAAGTGCCACAACAGCAATACCAATCTGCTCCGGCTCAAGAACCCCCAGCCGCCCCAGCCCGTCGTCCTGCTCCGGCA
CAACCGACCGCTCCGGTTGATGATATCGACGACGATATTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria gonorrhoeae MS11

81.667

100

0.84
  ssb Neisseria meningitidis MC58

81.111

100

0.834
  ssb Vibrio cholerae strain A1552

50

100

0.509
  ssb Glaesserella parasuis strain SC1401

46.774

100

0.497