Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   KCG54_RS02920 Genome accession   NZ_CP073115
Coordinates   590281..590568 (+) Length   95 a.a.
NCBI ID   WP_036472233.1    Uniprot ID   A0A4D7WS56
Organism   Neisseria subflava strain TT0077     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 585281..595568
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG54_RS02920 (KCG54_02920) comE 590281..590568 (+) 288 WP_036472233.1 helix-hairpin-helix domain-containing protein Machinery gene
  KCG54_RS02925 (KCG54_02925) hpnD 591005..591853 (+) 849 WP_254324590.1 presqualene diphosphate synthase HpnD -
  KCG54_RS02930 (KCG54_02930) hpnE 591850..593157 (+) 1308 WP_254324591.1 hydroxysqualene dehydroxylase HpnE -
  KCG54_RS02935 (KCG54_02935) - 593253..593972 (+) 720 WP_049331115.1 SDR family oxidoreductase -
  KCG54_RS02940 (KCG54_02940) thiL 594160..595116 (+) 957 WP_254324592.1 thiamine-phosphate kinase -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 9763.42 Da        Isoelectric Point: 10.4923

>NTDB_id=558027 KCG54_RS02920 WP_036472233.1 590281..590568(+) (comE) [Neisseria subflava strain TT0077]
MKKFLFGAFAAVCAAFSLAAVNINTASSAELEALPGIGPAKAKSIVEYRQKNGAFKSVEELKNVKGIGDAVLNKLKAEAT
VSSAAPKAAQPAVKK

Nucleotide


Download         Length: 288 bp        

>NTDB_id=558027 KCG54_RS02920 WP_036472233.1 590281..590568(+) (comE) [Neisseria subflava strain TT0077]
ATGAAGAAATTTTTATTTGGTGCATTTGCCGCTGTTTGTGCAGCATTCTCTTTGGCCGCCGTGAACATCAATACCGCATC
TTCTGCCGAACTGGAGGCCTTGCCGGGTATCGGCCCGGCTAAGGCGAAATCGATTGTAGAATACCGCCAGAAGAACGGTG
CGTTCAAATCGGTGGAGGAGCTGAAAAACGTGAAGGGCATTGGTGATGCGGTGCTGAACAAGTTGAAGGCGGAGGCGACG
GTTTCTTCTGCCGCGCCTAAGGCTGCCCAGCCTGCCGTGAAAAAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(20-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4D7WS56

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

62.626

100

0.653
  comE Neisseria gonorrhoeae MS11

62.626

100

0.653
  comE Neisseria gonorrhoeae MS11

62.626

100

0.653
  comE Neisseria gonorrhoeae MS11

62.626

100

0.653
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

54.321

85.263

0.463
  comEA Vibrio parahaemolyticus RIMD 2210633

44.186

90.526

0.4