Detailed information NTG0557994

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: KCG52_RS04470
• Genome accession: NZ_CP073114
• Coordinates: 954777..955664 (+)
• Length: 295 a.a.
• NCBI ID: WP_254322300.1
• Uniprot ID: -
• Organism: Neisseria subflava strain HP0048
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 949777..960664

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KCG52_RS04455 (KCG52_04435)	-	950320..951381 (+)	1062	WP_254345269.1	nucleotidyltransferase domain-containing protein	-
KCG52_RS04460 (KCG52_04440)	pilF	951775..953454 (+)	1680	WP_254345271.1	type IV-A pilus assembly ATPase PilB	Machinery gene
KCG52_RS04465 (KCG52_04445)	pilG	953534..954775 (+)	1242	WP_070615539.1	type II secretion system F family protein	Machinery gene
KCG52_RS04470 (KCG52_04450)	pilD	954777..955664 (+)	888	WP_254322300.1	A24 family peptidase	Machinery gene
KCG52_RS04475 (KCG52_04455)	coaE	955664..956284 (+)	621	WP_254345272.1	dephospho-CoA kinase	-
KCG52_RS04480 (KCG52_04460)	yacG	956281..956463 (+)	183	WP_003682475.1	DNA gyrase inhibitor YacG	-
KCG52_RS04485 (KCG52_04465)	glyQ	956545..957444 (+)	900	WP_003685919.1	glycine--tRNA ligase subunit alpha	-
KCG52_RS04490 (KCG52_04470)	lspA	957593..958099 (+)	507	WP_188212068.1	signal peptidase II	-
KCG52_RS04495 (KCG52_04475)	ispH	958113..959081 (+)	969	WP_254345276.1	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	-
KCG52_RS04500 (KCG52_04480)	ftsZ	959203..960402 (-)	1200	WP_003748303.1	cell division protein FtsZ	-

Sequence

Protein

• Length: 295 a.a.
• Molecular weight: 32396.59 Da
• Isoelectric Point: 8.3206

>NTDB_id=557994 KCG52_RS04470 WP_254322300.1 954777..955664(+) (pilD) [Neisseria subflava strain HP0048]
MLDSIYSAIDALSVLAPFAIPLAVILGLLIGSFLNVVIYRTPIMMEREWTQFSKEHLGIELTDEEKQPFNLRKPDSRCPK
CKSPIRVWQNIPILSYVFLGGKCHACKTHISIRYPLIELLTGVLFGIVAWQYGWSWATIGGLILTAILIALTFIDADTQY
LPDSLTQPLIWIGLLFNLNDTFVPLHSAVWGAIAGYMSLYTLCAVYKLLTGKIGMGNGDFKLLAALGAWLGVGILPVLIF
MAALVGLVGALIARVGKGQYFAFGPSLAVAGWIILVANAPITQLVQWWLVQSGFR

Nucleotide

• Length: 888 bp

>NTDB_id=557994 KCG52_RS04470 WP_254322300.1 954777..955664(+) (pilD) [Neisseria subflava strain HP0048]
ATGCTTGATAGTATTTACTCTGCCATCGACGCCCTCTCCGTTCTTGCGCCATTCGCTATTCCTTTAGCCGTTATTTTGGG
ATTACTGATTGGCAGCTTTCTGAACGTCGTCATTTATCGCACGCCGATAATGATGGAGCGTGAATGGACACAATTTTCCA
AAGAGCATTTGGGCATCGAGCTGACAGACGAAGAAAAACAGCCATTTAATCTGCGTAAACCGGATTCACGCTGCCCAAAA
TGCAAAAGTCCGATCAGAGTTTGGCAAAATATACCCATCCTCAGCTATGTTTTCCTAGGTGGGAAATGCCACGCCTGCAA
AACCCATATCAGCATACGCTATCCGTTGATTGAGCTGCTGACAGGTGTCTTATTCGGTATTGTCGCGTGGCAATACGGCT
GGTCATGGGCAACTATTGGCGGATTAATTCTGACTGCCATATTGATTGCGCTGACCTTTATCGATGCCGATACGCAATAT
TTGCCCGACAGCCTGACTCAACCCCTAATTTGGATCGGCCTGCTGTTTAATCTGAACGATACGTTCGTGCCCCTGCATTC
AGCCGTTTGGGGTGCAATCGCAGGCTATATGAGCCTTTATACTTTATGCGCCGTCTATAAACTTCTGACCGGTAAAATCG
GCATGGGCAATGGCGATTTCAAACTTTTGGCCGCACTCGGCGCATGGTTGGGCGTAGGGATATTGCCTGTTCTGATCTTC
ATGGCTGCCTTAGTCGGGCTGGTGGGCGCGCTCATCGCCCGTGTCGGTAAAGGTCAATATTTTGCTTTTGGTCCCAGCCT
CGCTGTGGCAGGATGGATTATTTTGGTTGCCAATGCACCTATTACCCAACTGGTACAATGGTGGCTCGTACAATCAGGAT
TCCGATAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (25-132)

• Type IV leader peptidase family (Peptidase_A24) (142-249)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Neisseria gonorrhoeae MS11	71.378	95.932	0.685
pilD	Vibrio cholerae strain A1552	48.077	88.136	0.424
pilD	Vibrio campbellii strain DS40M4	45.091	93.22	0.42
pilD	Acinetobacter baumannii D1279779	47.41	85.085	0.403
pilD	Acinetobacter nosocomialis M2	47.41	85.085	0.403