Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KCG52_RS01925 Genome accession   NZ_CP073114
Coordinates   401730..402257 (-) Length   175 a.a.
NCBI ID   WP_049323447.1    Uniprot ID   A0AA96NDM9
Organism   Neisseria subflava strain HP0048     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 396730..407257
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG52_RS01910 (KCG52_01890) - 397670..399331 (-) 1662 WP_254344757.1 MFS transporter -
  KCG52_RS01915 (KCG52_01895) - 399411..400215 (-) 805 Protein_375 integrase core domain-containing protein -
  KCG52_RS01920 (KCG52_01900) - 400267..401697 (-) 1431 WP_254344759.1 efflux transporter outer membrane subunit -
  KCG52_RS01925 (KCG52_01905) ssb 401730..402257 (-) 528 WP_049323447.1 single-stranded DNA-binding protein Machinery gene
  KCG52_RS01930 (KCG52_01910) - 402259..403641 (-) 1383 WP_254344761.1 MFS transporter -
  KCG52_RS01935 (KCG52_01915) - 403842..404465 (-) 624 WP_254344763.1 lytic transglycosylase domain-containing protein -
  KCG52_RS01940 (KCG52_01920) ppx 404638..406146 (+) 1509 WP_101755604.1 exopolyphosphatase -
  KCG52_RS01945 (KCG52_01925) rbfA 406234..406605 (+) 372 WP_003685554.1 30S ribosome-binding factor RbfA -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19579.62 Da        Isoelectric Point: 5.8022

>NTDB_id=557983 KCG52_RS01925 WP_049323447.1 401730..402257(-) (ssb) [Neisseria subflava strain HP0048]
MSLNKVILIGRLGRDPEVRYMPNGEAVCNFSVATSETWNDRNGQRVERTEWHNITMYRKLAEIAGQYLRKGSQVYLEGRI
QSRKYQGKDGIERTAYDIIANEMKMLGSRNDNSGGAPYDDGYNQGGHSSQSSYQQAPQQQYQSAPAQEPPAAPARRPAPA
QPTAPVEDIDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=557983 KCG52_RS01925 WP_049323447.1 401730..402257(-) (ssb) [Neisseria subflava strain HP0048]
ATGTCATTGAATAAAGTTATCCTCATCGGCCGTCTCGGCCGCGACCCGGAAGTCCGCTATATGCCCAACGGCGAGGCCGT
CTGTAACTTCAGCGTTGCCACCAGCGAAACTTGGAACGACCGCAACGGCCAACGCGTAGAACGTACCGAATGGCACAACA
TCACCATGTACCGCAAACTCGCCGAAATCGCCGGCCAATACCTGCGTAAAGGCAGCCAAGTGTATTTGGAAGGCCGTATC
CAAAGCCGTAAATACCAAGGCAAAGACGGTATCGAGCGCACCGCTTACGACATCATCGCCAATGAGATGAAAATGCTCGG
CAGCCGCAACGACAACAGCGGCGGCGCACCATACGATGACGGCTACAACCAAGGCGGTCATTCAAGCCAAAGCAGTTACC
AACAAGCACCTCAACAGCAATACCAATCTGCTCCGGCGCAAGAACCCCCGGCCGCCCCAGCCCGTCGTCCTGCACCGGCA
CAACCGACCGCTCCGGTTGAAGATATCGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria gonorrhoeae MS11

81.667

100

0.84
  ssb Neisseria meningitidis MC58

81.111

100

0.834
  ssb Vibrio cholerae strain A1552

49.438

100

0.503
  ssb Glaesserella parasuis strain SC1401

46.237

100

0.491