Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   KCX70_RS18320 Genome accession   NZ_CP073105
Coordinates   3971658..3972998 (+) Length   446 a.a.
NCBI ID   WP_102846589.1    Uniprot ID   A0A2N8SU60
Organism   Stutzerimonas stutzeri strain F2     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3966658..3977998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCX70_RS18300 (KCX70_18300) rluD 3967388..3968362 (-) 975 WP_212618371.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  KCX70_RS23430 - 3968376..3968504 (-) 129 WP_021206788.1 hypothetical protein -
  KCX70_RS18305 (KCX70_18305) - 3968657..3969664 (+) 1008 WP_102853740.1 outer membrane protein assembly factor BamD -
  KCX70_RS18310 (KCX70_18310) - 3969726..3969962 (+) 237 WP_212618372.1 PP0621 family protein -
  KCX70_RS18315 (KCX70_18315) pilS 3969952..3971544 (+) 1593 WP_021206785.1 ATP-binding protein Regulator
  KCX70_RS18320 (KCX70_18320) pilR 3971658..3972998 (+) 1341 WP_102846589.1 sigma-54 dependent transcriptional regulator Regulator
  KCX70_RS18325 (KCX70_18325) - 3973104..3974162 (-) 1059 WP_102846734.1 DUF2333 family protein -
  KCX70_RS18330 (KCX70_18330) - 3974377..3975990 (+) 1614 WP_212618374.1 PleD family two-component system response regulator -
  KCX70_RS18335 (KCX70_18335) - 3976039..3977988 (+) 1950 WP_212618375.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 49812.37 Da        Isoelectric Point: 6.7645

>NTDB_id=557959 KCX70_RS18320 WP_102846589.1 3971658..3972998(+) (pilR) [Stutzerimonas stutzeri strain F2]
MTARQKALIIDDEPDIRELLEITLGRMKLDTRSARNLKEARECLAREHYDLCLTDMRLPDGCGLELVQFIQQQYPQLPVA
MITAYGSLDTAIGALKAGAFDFLTKPVDLGRLRELVNTALRLRSPNPNALSVDNRLLGASPPMNLLRKQIGKLARSQAPV
YISGESGSGKELVARLIHEQGPRHERPFVPVNCGAIPSELMESEFFGHKKGSFTGAMEDKPGLFQAANGGTLFLDEVADL
PLPMQVKLLRAIQEKAVRAVGGAKEVVVDVRILCATHKDLASEVTAGRFRQDLYYRLNVIELRVPPLRERREDIAQLADV
MLHRLASDCGDTAARLHPDALAKLQSYRFPGNVRELENMLERAYTLCEGEEIKPSDLRLSDAPGIPEHGEASLAQIDNLE
DHLEEVERKLIMQALEETRWNRTAAAQRLGLSFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=557959 KCX70_RS18320 WP_102846589.1 3971658..3972998(+) (pilR) [Stutzerimonas stutzeri strain F2]
ATGACCGCCCGCCAGAAAGCGTTGATTATCGATGACGAACCCGATATCAGGGAACTCCTGGAGATCACCCTCGGGCGCAT
GAAGCTCGACACCCGCAGCGCCCGCAACCTCAAGGAAGCACGCGAGTGTCTGGCGCGTGAGCACTACGATCTCTGCCTCA
CCGACATGCGCCTGCCCGATGGCTGCGGGCTGGAGCTGGTGCAATTCATCCAGCAGCAATACCCGCAATTGCCCGTAGCG
ATGATCACCGCCTACGGTAGCCTCGACACCGCGATCGGCGCGCTCAAGGCCGGTGCTTTCGATTTCCTGACCAAGCCGGT
GGATCTGGGCCGTCTGCGCGAGCTGGTGAATACCGCGCTCCGGCTTCGCAGCCCGAACCCCAACGCGTTATCGGTCGACA
ACCGCTTGCTCGGCGCGTCGCCGCCGATGAACCTGCTGCGCAAACAGATCGGCAAACTGGCGCGCAGCCAGGCACCGGTC
TATATCAGCGGCGAATCCGGCAGCGGCAAGGAGCTGGTGGCGCGACTGATCCACGAACAAGGGCCACGCCACGAGCGGCC
CTTCGTTCCGGTCAACTGCGGCGCAATCCCTTCGGAGTTGATGGAAAGCGAGTTCTTCGGACACAAGAAGGGCAGTTTCA
CCGGTGCCATGGAAGACAAACCGGGACTGTTCCAGGCGGCCAACGGCGGCACCTTGTTCCTCGACGAAGTAGCCGACCTT
CCCCTGCCGATGCAGGTCAAGTTGCTCCGAGCGATCCAGGAAAAGGCTGTGCGTGCGGTCGGGGGCGCCAAGGAGGTGGT
GGTCGATGTGCGGATTCTCTGCGCCACCCACAAAGACCTCGCCAGCGAAGTCACCGCGGGCCGTTTTCGCCAGGACCTCT
ACTACCGCTTGAACGTCATCGAGCTGCGCGTGCCACCCCTGCGTGAACGTCGCGAAGACATCGCGCAGCTGGCCGACGTC
ATGCTTCATCGCCTCGCCAGCGATTGTGGCGATACCGCAGCGCGGCTGCATCCCGATGCGTTGGCGAAGCTGCAAAGCTA
CCGGTTCCCGGGCAACGTACGCGAGCTGGAAAACATGCTGGAGCGCGCCTACACGCTCTGCGAGGGTGAGGAGATCAAAC
CCAGCGACCTGCGCCTCTCTGACGCGCCGGGCATACCGGAGCATGGCGAAGCGAGTCTGGCGCAGATCGACAATCTGGAA
GATCACCTCGAAGAGGTAGAGCGCAAGCTGATCATGCAGGCGCTGGAAGAAACACGCTGGAACCGCACCGCCGCCGCTCA
GCGGCTGGGTCTGTCGTTCCGTTCCATGCGTTATCGCCTGAAGAAACTCGGGCTGGATTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(137-302)

Bacterial regulatory protein, Fis family (HTH_8)

(403-443)

Response regulator receiver domain (Response_reg)

(8-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N8SU60

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

84.234

99.552

0.839
  pilR Acinetobacter baumannii strain A118

49.024

100

0.507
  luxO Vibrio cholerae strain A1552

38.667

100

0.39