Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   KCX70_RS18315 Genome accession   NZ_CP073105
Coordinates   3969952..3971544 (+) Length   530 a.a.
NCBI ID   WP_021206785.1    Uniprot ID   -
Organism   Stutzerimonas stutzeri strain F2     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3964952..3976544
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCX70_RS18295 (KCX70_18295) pgeF 3966657..3967391 (-) 735 WP_212618370.1 peptidoglycan editing factor PgeF -
  KCX70_RS18300 (KCX70_18300) rluD 3967388..3968362 (-) 975 WP_212618371.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  KCX70_RS23430 - 3968376..3968504 (-) 129 WP_021206788.1 hypothetical protein -
  KCX70_RS18305 (KCX70_18305) - 3968657..3969664 (+) 1008 WP_102853740.1 outer membrane protein assembly factor BamD -
  KCX70_RS18310 (KCX70_18310) - 3969726..3969962 (+) 237 WP_212618372.1 PP0621 family protein -
  KCX70_RS18315 (KCX70_18315) pilS 3969952..3971544 (+) 1593 WP_021206785.1 ATP-binding protein Regulator
  KCX70_RS18320 (KCX70_18320) pilR 3971658..3972998 (+) 1341 WP_102846589.1 sigma-54 dependent transcriptional regulator Regulator
  KCX70_RS18325 (KCX70_18325) - 3973104..3974162 (-) 1059 WP_102846734.1 DUF2333 family protein -
  KCX70_RS18330 (KCX70_18330) - 3974377..3975990 (+) 1614 WP_212618374.1 PleD family two-component system response regulator -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 59045.15 Da        Isoelectric Point: 7.5985

>NTDB_id=557958 KCX70_RS18315 WP_021206785.1 3969952..3971544(+) (pilS) [Stutzerimonas stutzeri strain F2]
MATESLTFLGHQGRRILRLYHLYRVAIGLVLVLLISSDLHNDLMHMSNPAAFHYGAWLYLILNILVAVLLQNPKRELPVL
ALALLDVTLLAALFYFAGGTPSGIGNLLIVAVAIANILLHGRIGFFIAAVAATGLIYLTFYLNLSDSAASSQYVQAAALG
TLCFAAALLVQGLTRRLQVSESLARQRAEEVANLEALNAQILQRMRTGILVLDPQERVLLANQGALELLGQQDLTGERLA
PRCPDLLKALQQWRDNPTLRPRNFKAIPDGATLQPSFAMLQHGVKQDTLVFLEDISQITQKAQQLKLASLGRLTASIAHE
IRNPLGAISHAAQLLQESEALDAADLRLTQIIQDHSRRMNLVIENVLQLSRRRQAEPQLLDLKYWIHRFASEFRESLPAN
QRLHVETQGSSLQTRMDPNQLIQVLTNLVQNGLRYSGQQHQQAQVWLRVFRDETSDLPVLEILDDGPGVAPEQLQNIFEP
FFTTESKGTGLGLYISRELCESNQARLDYRQRDEGGSCFRIVFAHPRKLG

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=557958 KCX70_RS18315 WP_021206785.1 3969952..3971544(+) (pilS) [Stutzerimonas stutzeri strain F2]
GTGGCCACTGAGAGCCTGACGTTTCTCGGTCACCAGGGCCGGCGAATCCTCCGGCTCTATCACCTCTATCGCGTCGCGAT
CGGCCTGGTGCTGGTACTGCTCATCAGCAGCGACCTGCACAACGACCTGATGCACATGAGCAACCCGGCGGCGTTTCACT
ACGGCGCCTGGCTGTACCTGATTCTCAACATCCTCGTCGCGGTACTGCTGCAGAATCCCAAGCGCGAACTACCGGTGCTG
GCCCTTGCCCTGCTGGATGTGACCCTGCTGGCGGCCCTGTTCTATTTTGCCGGCGGCACGCCAAGCGGAATCGGCAACCT
GCTGATTGTCGCAGTCGCCATTGCCAATATCCTGCTGCATGGCCGCATCGGCTTCTTCATCGCCGCAGTCGCCGCTACCG
GCCTCATCTACCTGACGTTCTATCTCAACCTCAGCGATAGCGCCGCAAGCAGTCAGTATGTTCAGGCTGCGGCACTCGGC
ACGCTTTGCTTTGCCGCCGCGCTGCTGGTGCAAGGGCTGACGAGGCGACTACAGGTCAGCGAGAGCCTGGCACGTCAGCG
CGCCGAGGAAGTCGCCAATCTCGAAGCCTTGAACGCTCAGATCCTGCAGCGAATGCGCACCGGAATCCTCGTGCTCGATC
CGCAGGAACGCGTACTGCTTGCCAATCAGGGCGCGCTGGAATTGCTTGGTCAACAAGACCTGACCGGCGAACGCCTGGCC
CCTCGCTGCCCCGACCTGCTCAAGGCCTTGCAGCAATGGCGCGATAACCCAACCCTGCGGCCACGCAACTTCAAGGCAAT
ACCGGACGGCGCCACGCTGCAGCCGAGTTTCGCCATGCTGCAGCATGGCGTGAAGCAGGACACGCTGGTTTTCCTCGAGG
ACATCTCGCAGATCACGCAGAAGGCGCAGCAGCTCAAACTCGCGTCCCTCGGCCGACTGACCGCCAGCATCGCCCACGAG
ATCCGCAATCCCCTTGGCGCCATCAGCCACGCCGCGCAGCTTTTGCAGGAGTCCGAAGCACTGGACGCCGCTGACTTGCG
CCTTACGCAAATCATCCAGGATCACTCGCGGCGCATGAATCTGGTCATCGAGAACGTGCTGCAGCTCTCGCGCCGTCGCC
AGGCCGAACCACAACTACTCGACCTGAAATACTGGATTCATCGATTCGCCAGCGAGTTTCGCGAAAGCCTACCTGCCAAT
CAGCGCCTGCACGTGGAAACCCAGGGCAGCTCGCTGCAGACCCGCATGGACCCCAACCAGCTCATCCAGGTATTGACCAA
CCTGGTGCAGAACGGCCTGCGCTACAGCGGCCAGCAGCATCAGCAGGCTCAGGTATGGCTGCGCGTGTTTCGCGACGAGA
CCAGCGACCTGCCGGTGCTCGAGATACTCGACGACGGCCCGGGAGTGGCACCCGAACAACTGCAGAATATCTTCGAGCCA
TTCTTCACCACCGAAAGCAAGGGCACCGGCCTGGGCCTGTATATTTCCCGCGAGCTCTGCGAAAGCAATCAGGCGCGTCT
GGACTATCGTCAACGAGATGAAGGCGGCAGTTGTTTCCGCATCGTCTTCGCTCACCCACGCAAGCTGGGCTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)

PAS domain (PAS_8)

(201-246)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

65.595

99.811

0.655