Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KCX70_RS03200 Genome accession   NZ_CP073105
Coordinates   654128..654613 (+) Length   161 a.a.
NCBI ID   WP_102852785.1    Uniprot ID   -
Organism   Stutzerimonas stutzeri strain F2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 649128..659613
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCX70_RS03190 (KCX70_03190) uvrA 649626..652463 (-) 2838 WP_212619245.1 excinuclease ABC subunit UvrA -
  KCX70_RS03195 (KCX70_03195) - 652595..653962 (+) 1368 WP_212619246.1 MFS transporter -
  KCX70_RS03200 (KCX70_03200) ssb 654128..654613 (+) 486 WP_102852785.1 single-stranded DNA-binding protein Machinery gene
  KCX70_RS03205 (KCX70_03205) - 654624..655508 (+) 885 WP_021210053.1 sugar nucleotide-binding protein -
  KCX70_RS03210 (KCX70_03210) - 655501..656430 (+) 930 WP_212619247.1 NAD-dependent epimerase/dehydratase family protein -
  KCX70_RS03215 (KCX70_03215) - 656499..657185 (-) 687 WP_212619248.1 OmpW family outer membrane protein -
  KCX70_RS03220 (KCX70_03220) - 657381..658151 (+) 771 WP_212619249.1 DUF3450 domain-containing protein -
  KCX70_RS03225 (KCX70_03225) - 658148..659494 (+) 1347 WP_212619250.1 MotA/TolQ/ExbB proton channel family protein -

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 18021.96 Da        Isoelectric Point: 5.3024

>NTDB_id=557940 KCX70_RS03200 WP_102852785.1 654128..654613(+) (ssb) [Stutzerimonas stutzeri strain F2]
MARGVNKVILIGNVGGDPETRYMPNGNAVTNITLATTDSWKDKQTGQQQERTEWHRVVLFGKVAEIAGEYLRKGSQCYIE
GRLQTREWEKDGVKRYTTEVVVDMGGTMQLLGGRGGSSDDAPRQSQPRPQREPQQSRPQSQPQPAQQPAPDYDSFDDDIP
F

Nucleotide


Download         Length: 486 bp        

>NTDB_id=557940 KCX70_RS03200 WP_102852785.1 654128..654613(+) (ssb) [Stutzerimonas stutzeri strain F2]
ATGGCCAGAGGGGTGAATAAAGTCATCTTGATCGGCAATGTCGGCGGCGACCCGGAAACCCGCTACATGCCCAATGGCAA
TGCGGTGACCAACATCACGCTGGCCACTACCGACAGCTGGAAGGACAAGCAGACCGGACAGCAGCAGGAGCGCACCGAAT
GGCACCGCGTCGTGCTGTTCGGCAAGGTCGCCGAGATCGCCGGCGAGTACCTGCGCAAGGGCTCGCAGTGCTACATCGAA
GGCCGCTTGCAGACACGCGAATGGGAAAAGGACGGCGTCAAGCGCTACACCACCGAGGTGGTCGTGGACATGGGCGGCAC
CATGCAGTTGCTGGGCGGCCGTGGCGGCAGCTCGGATGACGCGCCGCGTCAGTCGCAGCCGCGCCCTCAGCGTGAACCGC
AACAGTCTCGCCCGCAGTCCCAGCCGCAGCCGGCGCAGCAGCCGGCTCCGGACTACGACAGCTTCGACGACGACATTCCG
TTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.571

100

0.615
  ssb Neisseria meningitidis MC58

46.369

100

0.516
  ssb Neisseria gonorrhoeae MS11

46.369

100

0.516
  ssb Glaesserella parasuis strain SC1401

45.856

100

0.516