Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   L1P11_RS23390 Genome accession   NZ_CP091044
Coordinates   4692446..4692982 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain STEC346     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4687446..4697982
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1P11_RS23370 soxR 4689174..4689638 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  L1P11_RS23375 soxS 4689724..4690047 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  L1P11_RS23380 pdeC 4690050..4691636 (-) 1587 WP_000019535.1 c-di-GMP phosphodiesterase PdeC -
  L1P11_RS23385 yjcB 4692066..4692347 (+) 282 WP_001295689.1 YjcB family protein -
  L1P11_RS23390 ssb 4692446..4692982 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  L1P11_RS23395 uvrA 4693236..4696058 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  L1P11_RS23400 yjbR 4696093..4696449 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  L1P11_RS23405 yjbQ 4696453..4696869 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  L1P11_RS23410 aphA 4696980..4697693 (-) 714 WP_235411996.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=557903 L1P11_RS23390 WP_000168305.1 4692446..4692982(-) (ssb) [Escherichia coli strain STEC346]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=557903 L1P11_RS23390 WP_000168305.1 4692446..4692982(-) (ssb) [Escherichia coli strain STEC346]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCACAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489