Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   L1P12_RS23135 Genome accession   NZ_CP091026
Coordinates   4636670..4637206 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain STEC383     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4631670..4642206
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1P12_RS23115 soxR 4633398..4633862 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  L1P12_RS23120 soxS 4633948..4634271 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  L1P12_RS23125 pdeC 4634274..4635860 (-) 1587 WP_000019548.1 c-di-GMP phosphodiesterase PdeC -
  L1P12_RS23130 yjcB 4636290..4636571 (+) 282 WP_001295689.1 YjcB family protein -
  L1P12_RS23135 ssb 4636670..4637206 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  L1P12_RS23140 uvrA 4637460..4640282 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  L1P12_RS23145 yjbR 4640317..4640673 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  L1P12_RS23150 yjbQ 4640677..4641093 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  L1P12_RS23155 - 4641204..4641539 (-) 336 Protein_4561 HAD family acid phosphatase -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=557740 L1P12_RS23135 WP_000168305.1 4636670..4637206(-) (ssb) [Escherichia coli strain STEC383]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=557740 L1P12_RS23135 WP_000168305.1 4636670..4637206(-) (ssb) [Escherichia coli strain STEC383]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489