Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   L1P13_RS22825 Genome accession   NZ_CP091024
Coordinates   4628958..4629494 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain STEC379     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4623958..4634494
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1P13_RS22805 soxR 4625686..4626150 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  L1P13_RS22810 soxS 4626236..4626559 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  L1P13_RS22815 pdeC 4626562..4628148 (-) 1587 WP_000019549.1 c-di-GMP phosphodiesterase PdeC -
  L1P13_RS22820 yjcB 4628578..4628859 (+) 282 WP_001341690.1 YjcB family protein -
  L1P13_RS22825 ssb 4628958..4629494 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  L1P13_RS22830 uvrA 4629748..4632570 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  L1P13_RS22835 yjbR 4632605..4632961 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  L1P13_RS22840 yjbQ 4632965..4633381 (-) 417 WP_000270372.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  L1P13_RS22845 aphA 4633492..4634205 (-) 714 WP_001307512.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=557658 L1P13_RS22825 WP_000168305.1 4628958..4629494(-) (ssb) [Escherichia coli strain STEC379]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=557658 L1P13_RS22825 WP_000168305.1 4628958..4629494(-) (ssb) [Escherichia coli strain STEC379]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGTAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489