Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   L1O93_RS21785 Genome accession   NZ_CP091022
Coordinates   4470128..4470664 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain STEC276     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4465128..4475664
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1O93_RS21765 soxR 4466856..4467320 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  L1O93_RS21770 soxS 4467406..4467729 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  L1O93_RS21775 pdeC 4467732..4469318 (-) 1587 WP_000019549.1 c-di-GMP phosphodiesterase PdeC -
  L1O93_RS21780 yjcB 4469748..4470029 (+) 282 WP_001295689.1 YjcB family protein -
  L1O93_RS21785 ssb 4470128..4470664 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  L1O93_RS21790 uvrA 4470918..4473740 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  L1O93_RS21795 yjbR 4473775..4474131 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  L1O93_RS21800 yjbQ 4474135..4474551 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  L1O93_RS21805 aphA 4474662..4475375 (-) 714 WP_001226928.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=557578 L1O93_RS21785 WP_000168305.1 4470128..4470664(-) (ssb) [Escherichia coli strain STEC276]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=557578 L1O93_RS21785 WP_000168305.1 4470128..4470664(-) (ssb) [Escherichia coli strain STEC276]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489