Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SK33_RS21855 Genome accession   NZ_CP073043
Coordinates   4530647..4531171 (-) Length   174 a.a.
NCBI ID   WP_003826621.1    Uniprot ID   A0A5B0T4S2
Organism   Citrobacter sp. MGH103     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4525647..4536171
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SK33_RS21845 - 4527546..4529090 (-) 1545 WP_048220041.1 site-specific integrase -
  SK33_RS21850 - 4529135..4530487 (-) 1353 WP_048220040.1 site-specific integrase -
  SK33_RS21855 ssb 4530647..4531171 (-) 525 WP_003826621.1 single-stranded DNA-binding protein SSB1 Machinery gene
  SK33_RS21860 uvrA 4531423..4534245 (+) 2823 WP_048220038.1 excinuclease ABC subunit UvrA -
  SK33_RS21865 - 4534361..4534717 (-) 357 WP_003031719.1 MmcQ/YjbR family DNA-binding protein -
  SK33_RS21870 aphA 4534845..4535558 (-) 714 WP_032948323.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18621.66 Da        Isoelectric Point: 5.2456

>NTDB_id=557437 SK33_RS21855 WP_003826621.1 4530647..4531171(-) (ssb) [Citrobacter sp. MGH103]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQSAPAAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=557437 SK33_RS21855 WP_003826621.1 4530647..4531171(-) (ssb) [Citrobacter sp. MGH103]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAAATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCGGAAGTGGCCAGTGAATATCTGCGTAAAGGTTCCCAGGTCTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAGTCCGGCGTAGAAAAGTACACCACTGAAGTTGTTGTTAACGTTGG
CGGCACCATGCAAATGCTGGGCGGTCGTCAGGGCGGTGGTGCTCCGGCAGGTGGCGGCCAGCAGCAGGGTGGTTGGGGTC
AGCCTCAGCAGCCGCAGGGCGGCAATCAGTTCAGCGGCGGTGCGCAGTCTCGTCCGCAGCAGTCCGCTCCGGCAGCGCCG
TCTAACGAACCGCCGATGGATTTCGACGACGATATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5B0T4S2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

73.889

100

0.764
  ssb Glaesserella parasuis strain SC1401

56.831

100

0.598
  ssb Neisseria meningitidis MC58

48.603

100

0.5
  ssb Neisseria gonorrhoeae MS11

48.603

100

0.5