Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   L1O96_RS24140 Genome accession   NZ_CP091016
Coordinates   4788947..4789483 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain STEC306     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4783947..4794483
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1O96_RS24120 soxR 4785675..4786139 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  L1O96_RS24125 soxS 4786225..4786548 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  L1O96_RS24130 pdeC 4786551..4788137 (-) 1587 WP_000019524.1 c-di-GMP phosphodiesterase PdeC -
  L1O96_RS24135 yjcB 4788567..4788848 (+) 282 WP_001295689.1 YjcB family protein -
  L1O96_RS24140 ssb 4788947..4789483 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  L1O96_RS24145 uvrA 4789737..4792559 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  L1O96_RS24150 yjbR 4792594..4792950 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  L1O96_RS24155 yjbQ 4792954..4793370 (-) 417 WP_000270372.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  L1O96_RS24160 aphA 4793481..4794194 (-) 714 WP_001307512.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=557334 L1O96_RS24140 WP_000168305.1 4788947..4789483(-) (ssb) [Escherichia coli strain STEC306]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=557334 L1O96_RS24140 WP_000168305.1 4788947..4789483(-) (ssb) [Escherichia coli strain STEC306]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGTAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489