Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   KBP50_RS21845 Genome accession   NZ_CP073011
Coordinates   4742328..4742816 (-) Length   162 a.a.
NCBI ID   WP_050350601.1    Uniprot ID   A0A0L0QRI2
Organism   Virgibacillus pantothenticus strain DSM 26     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4737328..4747816
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KBP50_RS21820 (KBP50_21820) - 4737997..4738482 (+) 486 WP_050350607.1 DUF1189 family protein -
  KBP50_RS21825 (KBP50_21825) modA 4738559..4739347 (+) 789 WP_050350606.1 molybdate ABC transporter substrate-binding protein -
  KBP50_RS21830 (KBP50_21830) - 4739824..4740045 (-) 222 WP_050350605.1 hypothetical protein -
  KBP50_RS21835 (KBP50_21835) - 4741134..4742057 (+) 924 WP_269082661.1 MFS transporter -
  KBP50_RS21840 (KBP50_21840) rpsR 4742080..4742310 (-) 231 WP_050350602.1 30S ribosomal protein S18 -
  KBP50_RS21845 (KBP50_21845) ssbA 4742328..4742816 (-) 489 WP_050350601.1 single-stranded DNA-binding protein Machinery gene
  KBP50_RS21850 (KBP50_21850) rpsF 4742832..4743122 (-) 291 WP_050350600.1 30S ribosomal protein S6 -
  KBP50_RS21855 (KBP50_21855) ychF 4743289..4744389 (-) 1101 WP_050350599.1 redox-regulated ATPase YchF -
  KBP50_RS21860 (KBP50_21860) - 4744633..4744830 (-) 198 WP_050350598.1 DUF951 domain-containing protein -
  KBP50_RS21865 (KBP50_21865) - 4745014..4746033 (-) 1020 WP_082240870.1 mechanosensitive ion channel family protein -
  KBP50_RS21870 (KBP50_21870) - 4746061..4747086 (-) 1026 WP_050350597.1 hypothetical protein -
  KBP50_RS21875 (KBP50_21875) yyaC 4747175..4747795 (+) 621 WP_050350596.1 spore protease YyaC -

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 17974.71 Da        Isoelectric Point: 4.5984

>NTDB_id=557312 KBP50_RS21845 WP_050350601.1 4742328..4742816(-) (ssbA) [Virgibacillus pantothenticus strain DSM 26]
MLNRVVLVGRLTKDPDLRYTPSGVAVANFTLAVNRPFSNQQGNREADFINCVVWRRAAENLANYMNKGSMVGVDGRVQTR
RFEGQDGKTVFVTEVVAESVQFLETKGSSQGGGQGASGFQPNRNQSQFEPQSNPYEQNQNNQDNPFQNNGEPIEISDDDL
PF

Nucleotide


Download         Length: 489 bp        

>NTDB_id=557312 KBP50_RS21845 WP_050350601.1 4742328..4742816(-) (ssbA) [Virgibacillus pantothenticus strain DSM 26]
ATGTTAAATCGTGTCGTACTTGTCGGCAGGTTAACGAAGGATCCTGATTTACGTTATACCCCAAGTGGAGTAGCCGTAGC
TAATTTTACGCTTGCGGTTAACCGTCCATTTTCTAATCAGCAGGGAAACCGAGAAGCGGATTTTATTAACTGTGTCGTTT
GGCGTAGAGCAGCGGAGAACCTTGCGAATTATATGAATAAAGGCAGTATGGTTGGTGTGGACGGACGTGTGCAAACACGC
CGATTTGAAGGTCAAGACGGAAAAACCGTATTTGTCACGGAAGTGGTGGCAGAAAGTGTTCAATTTTTGGAAACAAAAGG
TTCTTCTCAAGGCGGGGGGCAAGGTGCATCAGGATTTCAACCAAATAGAAACCAAAGCCAATTCGAACCACAATCTAATC
CATATGAACAAAACCAAAATAACCAGGACAATCCATTCCAAAATAATGGAGAGCCTATTGAAATATCAGATGATGATTTA
CCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0L0QRI2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

61.628

100

0.654
  ssb Latilactobacillus sakei subsp. sakei 23K

56.14

100

0.593
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.377

65.432

0.395
  ssb Glaesserella parasuis strain SC1401

32.778

100

0.364