Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SK40_RS09725 Genome accession   NZ_CP073007
Coordinates   2035510..2036034 (-) Length   174 a.a.
NCBI ID   WP_003826621.1    Uniprot ID   A0A5B0T4S2
Organism   Citrobacter sp. BIDMC108     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2030510..2041034
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SK40_RS09705 soxR 2032152..2032610 (-) 459 WP_003826630.1 redox-sensitive transcriptional activator SoxR -
  SK40_RS09710 soxS 2032697..2033020 (+) 324 WP_003031731.1 superoxide response transcriptional regulator SoxS -
  SK40_RS09715 - 2033023..2034609 (-) 1587 WP_048215121.1 EAL domain-containing protein -
  SK40_RS09720 - 2035162..2035443 (+) 282 WP_003826625.1 YjcB family protein -
  SK40_RS09725 ssb 2035510..2036034 (-) 525 WP_003826621.1 single-stranded DNA-binding protein SSB1 Machinery gene
  SK40_RS09730 uvrA 2036286..2039108 (+) 2823 WP_048227484.1 excinuclease ABC subunit UvrA -
  SK40_RS09735 - 2039391..2039747 (-) 357 WP_008786927.1 MmcQ/YjbR family DNA-binding protein -
  SK40_RS09740 aphA 2039875..2040588 (-) 714 WP_048227485.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18621.66 Da        Isoelectric Point: 5.2456

>NTDB_id=557258 SK40_RS09725 WP_003826621.1 2035510..2036034(-) (ssb) [Citrobacter sp. BIDMC108]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQSAPAAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=557258 SK40_RS09725 WP_003826621.1 2035510..2036034(-) (ssb) [Citrobacter sp. BIDMC108]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAAATGAAAGAGCAGACTG
AATGGCACCGTGTTGTGCTGTTCGGCAAACTGGCGGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTCTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAGTCCGGCGTAGAAAAGTACACCACAGAAGTTGTGGTTAACGTTGG
CGGCACCATGCAAATGCTGGGTGGTCGTCAGGGTGGTGGTGCTCCGGCAGGTGGCGGTCAGCAGCAGGGCGGTTGGGGTC
AACCTCAGCAGCCGCAGGGTGGCAACCAGTTCAGCGGCGGCGCACAGTCTCGCCCGCAACAGTCAGCGCCGGCAGCGCCG
TCTAACGAGCCGCCGATGGATTTCGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5B0T4S2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

73.889

100

0.764
  ssb Glaesserella parasuis strain SC1401

56.831

100

0.598
  ssb Neisseria meningitidis MC58

48.603

100

0.5
  ssb Neisseria gonorrhoeae MS11

48.603

100

0.5