NTDB

Overview

Name	recF	Type	Machinery gene
Locus tag	L1A13_RS10250	Genome accession	NZ_CP090889
Coordinates	1987357..1988454 (+)	Length	365 a.a.
NCBI ID	WP_000266660.1	Uniprot ID	Q97N44
Organism	Streptococcus pneumoniae strain CH2439
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1982357..1993454

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
L1A13_RS10225 (L1A13_10225)	pgsA	1982878..1983423 (-)	546	WP_000712141.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
L1A13_RS10230 (L1A13_10230)	rodZ	1983434..1984255 (-)	822	WP_001227958.1	cytoskeleton protein RodZ	-
L1A13_RS10235 (L1A13_10235)	-	1984297..1985580 (-)	1284	WP_000170216.1	pitrilysin family protein	-
L1A13_RS10240 (L1A13_10240)	-	1985577..1986827 (-)	1251	WP_000424281.1	pitrilysin family protein	-
L1A13_RS10245 (L1A13_10245)	yaaA	1986986..1987354 (+)	369	WP_000455903.1	S4 domain-containing protein YaaA	-
L1A13_RS10250 (L1A13_10250)	recF	1987357..1988454 (+)	1098	WP_000266660.1	DNA replication/repair protein RecF	Machinery gene
L1A13_RS10255 (L1A13_10255)	guaB	1988505..1989983 (-)	1479	WP_000073423.1	IMP dehydrogenase	-
L1A13_RS10260 (L1A13_10260)	trpS	1990135..1991160 (-)	1026	WP_000165445.1	tryptophan--tRNA ligase	-
L1A13_RS10265 (L1A13_10265)	-	1991366..1992988 (+)	1623	WP_000958770.1	ATP-binding cassette domain-containing protein	-

Sequence

Protein

Download Length: 365 a.a. Molecular weight: 41900.00 Da Isoelectric Point: 9.0596

                                >NTDB_id=557258 L1A13_RS10250 WP_000266660.1 1987357..1988454(+) (recF) [Streptococcus pneumoniae strain CH2439]

MWLQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTRTDKNLIHFDEEQLHLSGLVQKKTGS

IPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVLFAPEDLQLIKGAPSIRRKFIDMELGQIKPIYLSDLTNYNHILKQR

NTYLKSAQKIDETFLSVLDDQLVDYGCRVMNHRLDFIKKLESFGRKKHFELSNQIEELSISYQSSVNITDKQNLSESFKI

ALEKSRSRDLFKKNTGVGPHRDDISFYINGMDASFGSQGQHRSLVLSIKLAEIELMESITTESPILLLDDVMSELDNTRQ

LKLLETISQSIQTFITTTSLDHLQNLPENLSIFTIQDGKAAVNGN

Nucleotide

Download Length: 1098 bp

                                >NTDB_id=557258 L1A13_RS10250 WP_000266660.1 1987357..1988454(+) (recF) [Streptococcus pneumoniae strain CH2439]

ATGTGGCTACAACATCTATCTCTCAAGACTTTTCGTAATTACAAAGAAACGAAAATAGACTTTAATCCTAAATTGAATGT

CTTTTTGGGACGTAATGCACAAGGAAAAACAAACATGTTAGAGGCTATCTATTTTTTAGCCTTAACGCGTAGTCATCGAA

CTCGAACAGATAAAAATCTCATTCATTTTGATGAGGAACAACTTCATCTTTCAGGTCTCGTTCAGAAAAAAACTGGATCC

ATTCCCCTAGAAATCGAACTAACACAAAAAGGCCGTGTAACAAAAGTTAATCACTTAAAACAGGCACGCCTTTCAGATTA

TGTAGGACACATGAATGTTGTCTTATTTGCTCCTGAAGATTTACAACTAATTAAAGGAGCACCTTCGATTCGACGAAAAT

TCATTGATATGGAACTTGGGCAAATTAAGCCAATCTATTTATCTGACTTAACCAATTATAACCACATCCTAAAGCAAAGA

AACACTTACCTAAAATCAGCTCAAAAAATAGATGAAACATTCCTTTCTGTGTTAGATGATCAGCTAGTTGATTATGGATG

TCGTGTAATGAATCACCGCTTAGATTTCATAAAAAAACTAGAATCATTTGGGCGTAAGAAACATTTTGAACTCTCTAATC

AGATCGAAGAGTTGTCAATATCCTATCAATCTTCTGTCAATATAACTGACAAACAAAACTTATCCGAATCTTTCAAAATT

GCTTTAGAAAAAAGTAGATCCAGAGATTTATTTAAAAAGAATACTGGTGTCGGTCCTCATCGAGATGACATTTCTTTTTA

TATAAATGGGATGGATGCTAGTTTCGGAAGCCAAGGTCAACATCGTAGTCTCGTCCTCTCGATAAAATTAGCAGAAATCG

AATTAATGGAAAGCATTACCACAGAATCTCCGATATTACTGCTTGACGATGTGATGAGTGAACTTGACAACACTAGACAG

TTAAAATTATTAGAAACGATTTCTCAATCAATCCAAACCTTTATCACAACAACAAGCTTAGACCATCTTCAAAATCTGCC

AGAAAATCTAAGTATCTTCACTATTCAGGATGGTAAAGCTGCTGTAAATGGAAATTGA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-358)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	Q97N44

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
recF	Streptococcus pneumoniae R6	99.726	100	0.997
recF	Bacillus subtilis subsp. subtilis str. 168	45.902	100	0.46

Detailed information NTG0557258