Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KBW65_RS07970 Genome accession   NZ_CP072976
Coordinates   1637594..1638130 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain EC2341     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1632594..1643130
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KBW65_RS07940 (KBW65_07940) soxR 1633546..1634010 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  KBW65_RS07945 (KBW65_07945) soxS 1634096..1634419 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  KBW65_RS07950 (KBW65_07950) pdeC 1634422..1635141 (-) 720 Protein_1578 c-di-GMP phosphodiesterase PdeC -
  KBW65_RS07960 (KBW65_07960) pdeC 1635909..1636784 (-) 876 Protein_1580 c-di-GMP phosphodiesterase PdeC -
  KBW65_RS07965 (KBW65_07965) yjcB 1637214..1637495 (+) 282 WP_001295689.1 YjcB family protein -
  KBW65_RS07970 (KBW65_07970) ssb 1637594..1638130 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  KBW65_RS07975 (KBW65_07975) uvrA 1638384..1641206 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  KBW65_RS07980 (KBW65_07980) yjbR 1641241..1641597 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  KBW65_RS07985 (KBW65_07985) yjbQ 1641601..1642017 (-) 417 WP_000270372.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  KBW65_RS07990 (KBW65_07990) aphA 1642128..1642841 (-) 714 WP_097707775.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=557082 KBW65_RS07970 WP_000168305.1 1637594..1638130(-) (ssb) [Escherichia coli strain EC2341]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=557082 KBW65_RS07970 WP_000168305.1 1637594..1638130(-) (ssb) [Escherichia coli strain EC2341]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGTAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489