Detailed information NTG0556890

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: KBP48_RS04890
• Genome accession: NZ_CP072932
• Coordinates: 1068175..1069305 (-)
• Length: 376 a.a.
• NCBI ID: WP_071869741.1
• Uniprot ID: -
• Organism: Xylella fastidiosa subsp. multiplex strain BB08-1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1063175..1074305

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KBP48_RS04870 (KBP48_04870)	-	1063185..1063943 (+)	759	WP_027700753.1	LytTR family DNA-binding domain-containing protein	-
KBP48_RS04875 (KBP48_04875)	hemC	1063951..1064868 (+)	918	WP_004084955.1	hydroxymethylbilane synthase	-
KBP48_RS04880 (KBP48_04880)	-	1064922..1065731 (-)	810	WP_021358437.1	DUF481 domain-containing protein	-
KBP48_RS04885 (KBP48_04885)	-	1066514..1067482 (+)	969	WP_071869748.1	YafY family protein	-
KBP48_RS04890 (KBP48_04890)	pilU	1068175..1069305 (-)	1131	WP_071869741.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
KBP48_RS04895 (KBP48_04895)	pilT	1069471..1070505 (-)	1035	WP_004084948.1	type IV pilus twitching motility protein PilT	Machinery gene
KBP48_RS04900 (KBP48_04900)	-	1071148..1071360 (+)	213	WP_071869740.1	hypothetical protein	-
KBP48_RS04905 (KBP48_04905)	-	1071745..1072572 (+)	828	WP_004084945.1	glycosyltransferase family 2 protein	-
KBP48_RS04910 (KBP48_04910)	-	1073202..1074026 (-)	825	WP_004084943.1	glycosyltransferase family 2 protein	-

Sequence

Protein

• Length: 376 a.a.
• Molecular weight: 42506.76 Da
• Isoelectric Point: 6.5563

>NTDB_id=556890 KBP48_RS04890 WP_071869741.1 1068175..1069305(-) (pilU) [Xylella fastidiosa subsp. multiplex strain BB08-1]
MTTIDFTSLLKLMAHQKASDLFITCGMPPSMKIHGNITPITQVPLTSEQSRDIVFNIMSEAQREEFEKVHECNFAIDITS
IGRFRVNAFYQRNQIGMVLRRIEMSIPTFEKLKLPQVAKELVMEKRGIIIIVGATGSGKSTSMASMINHRNHNSTGHIVT
IEDPIEFIHKHEKCIITQREIGTDTDSWENALKNTLRQAPDVIVIGEVRTQETMDHAISFSETGHLVMCTLHANNANQAI
DRIINFFPEERRSQLLMDLSLNLKGIIAQQLIPSADGKERCLAAEVLRDSRLVQDYIRVGEIHKLKEVMQNHNDLGMTTF
DQSLVELYHNGAINYKEALRHADSQNEVRLRIKLSDGKDAKTLSQGFDGIEIAEMS

Nucleotide

• Length: 1131 bp

>NTDB_id=556890 KBP48_RS04890 WP_071869741.1 1068175..1069305(-) (pilU) [Xylella fastidiosa subsp. multiplex strain BB08-1]
ATGACTACCATCGATTTCACATCCTTACTTAAGCTGATGGCGCACCAAAAAGCGTCGGATTTATTTATTACCTGTGGAAT
GCCGCCTTCAATGAAGATTCACGGCAATATCACTCCAATCACACAAGTACCGCTGACTTCAGAGCAAAGCCGTGACATAG
TCTTCAATATCATGAGTGAAGCGCAGCGCGAGGAATTCGAGAAGGTCCACGAATGCAACTTCGCAATTGACATCACCAGC
ATTGGTCGCTTCCGTGTCAACGCTTTCTATCAGCGTAACCAAATTGGTATGGTGTTACGCAGAATCGAGATGTCTATTCC
CACCTTCGAAAAACTGAAGCTCCCGCAGGTCGCTAAGGAGCTCGTCATGGAGAAGCGCGGCATCATCATCATCGTTGGTG
CTACGGGTAGTGGTAAATCGACCTCAATGGCATCAATGATCAACCACCGTAATCACAACTCAACAGGACATATCGTCACT
ATCGAAGATCCCATTGAGTTTATTCACAAGCACGAGAAATGCATCATCACCCAACGCGAAATAGGTACCGATACCGACAG
TTGGGAAAATGCCTTGAAAAATACCCTACGCCAAGCCCCAGATGTGATTGTGATTGGTGAAGTGCGTACTCAAGAGACAA
TGGATCATGCCATCTCGTTCTCCGAAACCGGCCATCTGGTCATGTGTACCCTACATGCCAACAACGCCAATCAAGCAATA
GACCGCATTATTAACTTCTTCCCGGAAGAGCGGCGCAGCCAATTACTGATGGATCTGTCGCTGAATCTAAAAGGCATCAT
CGCTCAACAATTGATCCCATCTGCGGATGGTAAAGAGCGCTGTTTAGCAGCGGAAGTTTTGCGCGACAGTCGATTAGTAC
AGGACTACATACGCGTAGGCGAGATCCATAAGCTCAAAGAAGTCATGCAAAACCACAATGATCTTGGAATGACGACATTC
GATCAAAGTCTAGTCGAACTCTATCATAACGGAGCCATTAACTATAAAGAGGCACTACGCCATGCTGATTCGCAGAACGA
GGTACGCCTGCGTATTAAACTCTCCGATGGGAAAGACGCTAAAACTCTGAGTCAAGGATTCGATGGAATAGAAATTGCAG
AAATGTCATAA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (114-273)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	61.58	97.606	0.601
pilU	Acinetobacter baylyi ADP1	60.169	94.149	0.566
pilU	Vibrio cholerae strain A1552	50.843	94.681	0.481
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	41.484	96.809	0.402