Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KAQ61_RS15885 Genome accession   NZ_CP072916
Coordinates   3368797..3369363 (-) Length   188 a.a.
NCBI ID   WP_045265880.1    Uniprot ID   A0AA42HPU5
Organism   Comamonas aquatica strain NEB418     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3363797..3374363
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KAQ61_RS15860 (KAQ61_15860) hprK 3364142..3365107 (+) 966 WP_042415854.1 HPr(Ser) kinase/phosphatase -
  KAQ61_RS15865 (KAQ61_15865) fur 3365175..3365603 (-) 429 WP_042415857.1 ferric iron uptake transcriptional regulator -
  KAQ61_RS15870 (KAQ61_15870) - 3365751..3366296 (+) 546 WP_045265883.1 outer membrane protein assembly factor BamE -
  KAQ61_RS15875 (KAQ61_15875) dapB 3366395..3367222 (+) 828 WP_045265882.1 4-hydroxy-tetrahydrodipicolinate reductase -
  KAQ61_RS15880 (KAQ61_15880) - 3367272..3368743 (-) 1472 Protein_3099 diguanylate cyclase -
  KAQ61_RS15885 (KAQ61_15885) ssb 3368797..3369363 (-) 567 WP_045265880.1 single-stranded DNA-binding protein Machinery gene
  KAQ61_RS15890 (KAQ61_15890) - 3369635..3370816 (-) 1182 WP_210931952.1 MFS transporter -
  KAQ61_RS15895 (KAQ61_15895) uvrA 3371016..3374054 (+) 3039 WP_210929784.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 20444.57 Da        Isoelectric Point: 5.9554

>NTDB_id=556874 KAQ61_RS15885 WP_045265880.1 3368797..3369363(-) (ssb) [Comamonas aquatica strain NEB418]
MASVNKVIIVGNLGRDPEMRTFPSGDQVANVTIATTDRWRDKNTGENKESTEWHRVVFNGRLAEIVGQYLRKGSQVYVEG
SLRTRKWTDQATGQERYATEIRADSMQMLGSRQGMGGGNQNQGYGDDAGYGDNGGYEAQAPRRAPASAPRQAAPQQRMAP
PAAAPAPMAPPPQRAASGFDDMDDDIPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=556874 KAQ61_RS15885 WP_045265880.1 3368797..3369363(-) (ssb) [Comamonas aquatica strain NEB418]
ATGGCATCCGTCAACAAGGTCATCATCGTCGGCAACTTGGGGCGCGACCCCGAAATGCGCACCTTCCCCAGCGGGGACCA
GGTCGCCAACGTCACCATCGCCACCACCGACCGCTGGCGCGACAAAAACACCGGCGAGAACAAGGAATCCACCGAGTGGC
ACCGCGTGGTCTTCAACGGCCGCCTGGCCGAGATCGTCGGCCAGTACCTGCGCAAGGGCTCGCAGGTCTATGTGGAAGGC
AGCCTGCGCACGCGCAAGTGGACCGACCAGGCCACCGGCCAGGAGCGCTACGCCACCGAAATCCGTGCCGACAGCATGCA
GATGCTGGGCAGCCGCCAGGGCATGGGCGGTGGCAACCAGAACCAGGGCTATGGCGATGACGCCGGCTATGGCGACAACG
GTGGCTATGAGGCCCAGGCCCCACGCCGCGCGCCAGCGTCCGCACCGCGCCAGGCCGCACCCCAGCAGCGCATGGCACCG
CCCGCGGCGGCTCCCGCGCCCATGGCCCCACCGCCCCAGCGCGCGGCTTCCGGCTTTGACGACATGGACGACGACATTCC
GTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

53.03

100

0.559
  ssb Vibrio cholerae strain A1552

51.546

100

0.532
  ssb Neisseria gonorrhoeae MS11

43.915

100

0.441
  ssb Neisseria meningitidis MC58

43.386

100

0.436