Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   J9870_RS28355 Genome accession   NZ_CP072913
Coordinates   6470197..6471690 (+) Length   497 a.a.
NCBI ID   WP_210642000.1    Uniprot ID   -
Organism   Pseudomonas sp. Tri1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6465197..6476690
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J9870_RS28340 - 6466455..6466997 (+) 543 WP_246883059.1 sorbitol dehydrogenase family protein -
  J9870_RS28345 - 6466994..6468628 (+) 1635 WP_210641998.1 GMC family oxidoreductase -
  J9870_RS28350 - 6468633..6469910 (-) 1278 WP_210641999.1 HAMP domain-containing sensor histidine kinase -
  J9870_RS28355 comM 6470197..6471690 (+) 1494 WP_210642000.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  J9870_RS28360 - 6471697..6472911 (-) 1215 WP_210642001.1 aldose 1-epimerase family protein -
  J9870_RS28365 - 6473285..6475261 (-) 1977 WP_210642002.1 methyl-accepting chemotaxis protein -
  J9870_RS28370 - 6475449..6476369 (-) 921 WP_210642003.1 LysR substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53067.24 Da        Isoelectric Point: 8.2115

>NTDB_id=556831 J9870_RS28355 WP_210642000.1 6470197..6471690(+) (comM) [Pseudomonas sp. Tri1]
MSLAIVHSRAQVGVEAPAVTVEVHLANGLPSLTMVGLPEAAVKESKDRVRSAIINSGLSFPARRITLNLAPADLPKDGGR
FDLAIALGILAASVQVPTLMLDDVECLGELALSGAVRPVRGVLPAALAARKAGRTLVVPWANAEEACLASGLKVIAVNHL
LEAVAHFNGHTPVKTFVSNGLLSASKPYPDLNEVQGQAGAKRALLIAAAGAHNLLLSGPPGTGKTLLASRLPGLLPPLAE
SEALEVAAIQSVASCVPLSHWPQRPFRQPHHSASGPALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVVSRARDRVRFPARFQLVAAMNPCPCGYLGEPSGRCSCTPDMVQRYRNKLSGPLLDRIDLHLTVAREATALNPRHEP
GADTATVAEQVAQARERQQKRQDCANAFLDLPGLRQHCKLSAIDETWLETACERLTLSLRAAHRLLKVARTLADLERVDQ
ISREHLAEALQYRPATP

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=556831 J9870_RS28355 WP_210642000.1 6470197..6471690(+) (comM) [Pseudomonas sp. Tri1]
ATGTCGCTTGCCATTGTCCATAGCCGCGCCCAGGTGGGGGTGGAGGCTCCTGCCGTTACCGTTGAAGTTCACCTGGCCAA
TGGCTTGCCGTCGTTGACGATGGTCGGCTTGCCGGAGGCGGCGGTGAAGGAAAGCAAGGACCGGGTGCGCAGCGCGATCA
TCAACTCGGGCCTGAGTTTTCCGGCGCGGCGCATCACCTTGAACCTGGCGCCGGCGGATCTACCAAAGGACGGCGGTCGG
TTCGACCTGGCCATTGCCTTGGGGATCCTCGCAGCCAGCGTGCAAGTACCGACCCTGATGCTCGACGACGTTGAATGCCT
TGGCGAGTTGGCGTTATCCGGCGCCGTGCGACCGGTACGCGGGGTATTGCCGGCAGCGCTGGCGGCGCGCAAGGCCGGGC
GTACGCTGGTGGTGCCATGGGCGAATGCCGAGGAAGCCTGCTTGGCGTCGGGGCTGAAGGTGATTGCGGTGAATCATCTG
CTCGAAGCCGTGGCTCACTTTAACGGCCACACCCCGGTCAAGACGTTTGTTTCCAACGGGCTGCTTTCAGCCAGCAAGCC
CTACCCCGACCTGAATGAAGTACAAGGCCAGGCCGGGGCCAAGCGGGCGTTGCTGATCGCCGCCGCAGGGGCTCACAACC
TGTTGCTCAGCGGACCACCGGGCACCGGCAAGACCCTGCTGGCGAGCCGTTTGCCGGGGCTGCTACCGCCGTTGGCGGAA
AGTGAGGCCCTGGAGGTCGCAGCCATTCAGTCGGTCGCCAGTTGCGTGCCGTTGAGCCATTGGCCGCAGCGCCCGTTTCG
CCAGCCCCACCACTCGGCTTCCGGTCCGGCGCTGGTGGGCGGTGGATCGAAACCGCAACCAGGGGAAATCACCCTCGCCC
ACCATGGCGTACTGTTCCTGGATGAACTGCCGGAGTTCGACCGTAAGGTGCTGGAAGTCCTGAGGGAACCACTGGAGTCG
GGCCACATCGTGGTTTCTCGCGCCCGAGACCGTGTGCGCTTTCCGGCACGCTTTCAATTGGTAGCGGCGATGAATCCCTG
TCCCTGTGGATATCTTGGCGAGCCCAGCGGTCGTTGCTCATGTACACCGGACATGGTGCAGCGCTACCGCAATAAACTCT
CTGGCCCTCTGCTGGACCGCATCGACCTGCACCTGACCGTCGCCCGGGAGGCCACGGCGTTGAACCCAAGGCACGAACCC
GGTGCCGATACCGCCACCGTCGCCGAGCAAGTGGCCCAGGCCCGGGAGCGCCAGCAAAAGCGTCAGGACTGCGCCAACGC
TTTCCTGGATCTGCCGGGCTTGCGTCAGCATTGCAAATTATCCGCAATCGATGAAACGTGGCTGGAAACCGCTTGCGAGC
GCCTGACCTTATCGCTACGAGCCGCCCACCGCCTGCTCAAGGTCGCCCGTACGTTGGCGGACCTTGAGCGGGTGGATCAA
ATCAGTCGCGAGCACCTGGCCGAAGCATTGCAGTATCGGCCCGCAACGCCCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

55.556

99.598

0.553
  comM Vibrio cholerae strain A1552

55.354

99.598

0.551
  comM Haemophilus influenzae Rd KW20

53.908

100

0.541
  comM Glaesserella parasuis strain SC1401

53

100

0.533
  comM Legionella pneumophila str. Paris

50.806

99.799

0.507
  comM Legionella pneumophila strain ERS1305867

50.806

99.799

0.507
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.23

100

0.469