Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   J9870_RS26140 Genome accession   NZ_CP072913
Coordinates   6005504..6006022 (-) Length   172 a.a.
NCBI ID   WP_092444796.1    Uniprot ID   -
Organism   Pseudomonas sp. Tri1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6000504..6011022
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J9870_RS26130 - 6002831..6004147 (-) 1317 WP_210641380.1 MFS transporter -
  J9870_RS26135 - 6004359..6005426 (+) 1068 WP_210641382.1 LacI family DNA-binding transcriptional regulator -
  J9870_RS26140 ssb 6005504..6006022 (-) 519 WP_092444796.1 single-stranded DNA-binding protein Machinery gene
  J9870_RS26145 - 6006032..6007429 (-) 1398 WP_210641384.1 MFS transporter -
  J9870_RS26150 uvrA 6007609..6010443 (+) 2835 WP_210641385.1 excinuclease ABC subunit UvrA -
  J9870_RS26155 bfr 6010538..6011002 (-) 465 WP_025215751.1 bacterioferritin -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19241.40 Da        Isoelectric Point: 5.9455

>NTDB_id=556826 J9870_RS26140 WP_092444796.1 6005504..6006022(-) (ssb) [Pseudomonas sp. Tri1]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDQQQGGNNYQQSAPRQQAPRPQQSAPQPQRERPAPQQAAPQPA
PDFDSFDDDIPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=556826 J9870_RS26140 WP_092444796.1 6005504..6006022(-) (ssb) [Pseudomonas sp. Tri1]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACTTGCGGCCAGGATCCTGAGGTTCGCTACCTGCCCAACGGCAA
CGCCGTGACCAACCTGAGTCTGGCGACCAGCGAACAGTGGACCGACAAGCAGACCGGCCAGAAGGTCGAGAAGACCGAAT
GGCACCGCGTGTCGATGTTCGGCAAAGTGGCGGAGATCGCCGGCGAATACCTGCGCAAGGGTTCGCAGGTATACATCGAG
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGTATCAAGCGTTACACCACCGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTGGGCGGCCGTCCACAGGGCGACCAGCAACAAGGTGGCAACAACTACCAGCAGTCGGCTCCGCGTCAGC
AGGCGCCTCGTCCACAGCAGTCGGCTCCACAGCCACAACGCGAGCGTCCGGCCCCACAACAGGCCGCGCCGCAACCGGCT
CCGGATTTCGACAGCTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.61
  ssb Glaesserella parasuis strain SC1401

48.901

100

0.517
  ssb Neisseria meningitidis MC58

46.927

100

0.488
  ssb Neisseria gonorrhoeae MS11

46.927

100

0.488