Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MYSTI_RS05545 Genome accession   NC_020126
Coordinates   1395651..1396166 (+) Length   171 a.a.
NCBI ID   WP_015346725.1    Uniprot ID   -
Organism   Myxococcus stipitatus DSM 14675     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1390651..1401166
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MYSTI_RS05525 (MYSTI_01109) - 1391129..1391590 (+) 462 WP_015346721.1 PTS sugar transporter subunit IIA -
  MYSTI_RS05530 (MYSTI_01110) - 1391614..1392459 (+) 846 WP_015346722.1 hypothetical protein -
  MYSTI_RS05535 (MYSTI_01111) dtd 1392456..1392923 (-) 468 WP_015346723.1 D-aminoacyl-tRNA deacylase -
  MYSTI_RS05540 (MYSTI_01112) dacB 1393150..1395426 (+) 2277 WP_015346724.1 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine endopeptidase -
  MYSTI_RS05545 (MYSTI_01113) ssb 1395651..1396166 (+) 516 WP_015346725.1 single-stranded DNA-binding protein Machinery gene
  MYSTI_RS05550 (MYSTI_01114) - 1396368..1397042 (-) 675 WP_015346726.1 succinate dehydrogenase cytochrome b558 subunit -
  MYSTI_RS05555 (MYSTI_01115) - 1397298..1398188 (+) 891 WP_015346727.1 Hsp33 family molecular chaperone HslO -
  MYSTI_RS05560 (MYSTI_01116) - 1398223..1399254 (+) 1032 WP_015346728.1 Leu/Phe/Val dehydrogenase -
  MYSTI_RS05565 (MYSTI_01117) - 1399320..1400126 (+) 807 WP_015346729.1 phosphoribosyltransferase -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18052.84 Da        Isoelectric Point: 5.3106

>NTDB_id=55650 MYSTI_RS05545 WP_015346725.1 1395651..1396166(+) (ssb) [Myxococcus stipitatus DSM 14675]
MAGGVNKVILIGNLGADPEVRFTPGGQAVANFRIATSESWNDKNGQKQERTEWHRIVVWGKLAELCGEYLKKGRQCYVEG
RLQTREWTDKENRKNYTTEVVANAVTFLGGRDAGDGMGGGGGGGGGRRQFGGQQQRGGMDGGDYGQPPPMDDGMGGGGGG
GGGNNEDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=55650 MYSTI_RS05545 WP_015346725.1 1395651..1396166(+) (ssb) [Myxococcus stipitatus DSM 14675]
ATGGCAGGTGGCGTGAACAAGGTCATCCTCATCGGCAACCTGGGGGCGGACCCGGAAGTGCGCTTCACCCCGGGGGGCCA
GGCCGTCGCGAACTTCCGCATCGCCACGAGCGAGAGCTGGAACGACAAGAACGGCCAGAAGCAGGAGCGCACCGAGTGGC
ACCGCATCGTCGTCTGGGGAAAGCTCGCGGAGCTCTGCGGCGAGTACCTGAAGAAGGGACGCCAGTGCTACGTCGAGGGG
CGCCTGCAGACGCGTGAGTGGACCGACAAGGAGAACCGGAAGAACTACACCACGGAGGTCGTCGCCAACGCGGTGACGTT
CCTGGGCGGTCGTGACGCCGGGGACGGCATGGGTGGTGGCGGTGGCGGTGGTGGTGGGCGCCGGCAGTTCGGCGGGCAGC
AGCAGCGCGGTGGCATGGACGGCGGCGACTACGGCCAGCCGCCCCCCATGGATGACGGCATGGGTGGTGGTGGCGGCGGT
GGTGGCGGCAACAACGAGGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

47.312

100

0.515
  ssb Glaesserella parasuis strain SC1401

40.838

100

0.456
  ssb Neisseria gonorrhoeae MS11

43.931

100

0.444
  ssb Neisseria meningitidis MC58

43.931

100

0.444

Multiple sequence alignment