Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   J8L76_RS08290 Genome accession   NZ_CP072875
Coordinates   1786116..1786586 (+) Length   156 a.a.
NCBI ID   WP_216125948.1    Uniprot ID   A0A975SP95
Organism   Azospira inquinata strain Azo-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1781116..1791586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J8L76_RS08275 (J8L76_08275) - 1781329..1781562 (-) 234 WP_216125908.1 hypothetical protein -
  J8L76_RS08280 (J8L76_08280) uvrA 1781741..1784560 (-) 2820 WP_216125930.1 excinuclease ABC subunit UvrA -
  J8L76_RS08285 (J8L76_08285) - 1784865..1786082 (+) 1218 WP_216125945.1 MFS transporter -
  J8L76_RS08290 (J8L76_08290) ssb 1786116..1786586 (+) 471 WP_216125948.1 single-stranded DNA-binding protein Machinery gene
  J8L76_RS08295 (J8L76_08295) - 1786669..1788111 (+) 1443 WP_216125950.1 tetratricopeptide repeat protein -
  J8L76_RS08300 (J8L76_08300) - 1788422..1788799 (+) 378 WP_216125953.1 DUF1992 domain-containing protein -
  J8L76_RS08305 (J8L76_08305) - 1788837..1790720 (+) 1884 WP_216125956.1 potassium transporter Kup -
  J8L76_RS08310 (J8L76_08310) - 1790821..1791198 (-) 378 WP_216125957.1 oxidoreductase -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17272.21 Da        Isoelectric Point: 5.9936

>NTDB_id=556494 J8L76_RS08290 WP_216125948.1 1786116..1786586(+) (ssb) [Azospira inquinata strain Azo-2]
MASVNKVILVGNLGADPETRYMTNGDAVANVRLATTESWKDKSSGERREVTEWHRVVFYRKLAEIVGQYLKKGSSVYIEG
RIRTRKWQDKEGQERYTTEIEATEMQMLGRREGSGAPAGDSYGGGSAGGDYERSAAPAPAKKKAPSFDDMDDDIPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=556494 J8L76_RS08290 WP_216125948.1 1786116..1786586(+) (ssb) [Azospira inquinata strain Azo-2]
ATGGCTTCTGTGAATAAAGTAATCCTGGTCGGCAACCTGGGCGCCGATCCGGAAACCCGATACATGACTAATGGGGATGC
GGTGGCCAATGTCCGTCTGGCCACCACCGAAAGCTGGAAAGACAAATCTAGCGGTGAACGCCGGGAAGTGACCGAATGGC
ACCGGGTGGTGTTCTACCGCAAGCTGGCGGAAATCGTCGGCCAGTACCTGAAAAAGGGCTCTTCCGTCTATATCGAAGGC
CGCATCCGCACCCGCAAATGGCAGGATAAGGAAGGCCAGGAGCGTTACACCACGGAAATCGAAGCCACGGAAATGCAGAT
GCTGGGCCGCCGGGAAGGCAGCGGCGCCCCCGCTGGGGATTCCTACGGTGGCGGTAGCGCCGGTGGGGACTATGAGCGCT
CCGCCGCTCCCGCCCCGGCCAAGAAAAAGGCCCCGTCTTTCGACGACATGGATGACGACATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

53.333

100

0.615
  ssb Neisseria gonorrhoeae MS11

50.568

100

0.571
  ssb Vibrio cholerae strain A1552

49.718

100

0.564
  ssb Neisseria meningitidis MC58

49.425

100

0.551