Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   J8G15_RS16865 Genome accession   NZ_CP072852
Coordinates   3633390..3633908 (+) Length   172 a.a.
NCBI ID   WP_210543597.1    Uniprot ID   -
Organism   Rhodoferax sp. PAMC 29310 strain PAMC29310     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3628390..3638908
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J8G15_RS16855 uvrA 3628904..3631969 (-) 3066 WP_240538347.1 excinuclease ABC subunit UvrA -
  J8G15_RS16860 - 3632170..3633363 (+) 1194 WP_210543595.1 MFS transporter -
  J8G15_RS16865 ssb 3633390..3633908 (+) 519 WP_210543597.1 single-stranded DNA-binding protein Machinery gene
  J8G15_RS16870 - 3634042..3635496 (-) 1455 WP_240538348.1 TolC family protein -
  J8G15_RS16875 - 3635588..3636817 (-) 1230 WP_210542233.1 IS256 family transposase -
  J8G15_RS22165 - 3636777..3637082 (-) 306 WP_210543601.1 TolC family protein -
  J8G15_RS16885 - 3637169..3638108 (-) 940 Protein_3350 IS481 family transposase -
  J8G15_RS16890 - 3638196..3638351 (-) 156 WP_210543603.1 hypothetical protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18444.66 Da        Isoelectric Point: 5.3400

>NTDB_id=556419 J8G15_RS16865 WP_210543597.1 3633390..3633908(+) (ssb) [Rhodoferax sp. PAMC 29310 strain PAMC29310]
MASVNKVILVGNLGRDPEIRYLPSGDPVANITIATSSKYKGKDGNMVEETEWHRVTFFGKLAEIVGQYLKKGRPVYVEGR
LKTRKYTDKDGIEKYATDIVANEMQMLGGREGMGEPSGSDEDYGGGNAGGGGGYSRPAQASRPVAAAPAVRQVPAQARPA
SGFDDMDDDIPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=556419 J8G15_RS16865 WP_210543597.1 3633390..3633908(+) (ssb) [Rhodoferax sp. PAMC 29310 strain PAMC29310]
ATGGCATCAGTCAACAAAGTCATTCTGGTCGGGAACTTGGGTCGCGACCCCGAAATCAGGTATCTGCCCAGTGGAGATCC
CGTCGCGAATATCACCATCGCCACCAGCAGCAAGTACAAAGGCAAAGACGGCAACATGGTCGAAGAGACCGAGTGGCACC
GCGTCACCTTTTTTGGAAAACTGGCTGAAATCGTAGGTCAATACCTCAAAAAGGGTCGTCCGGTTTACGTCGAGGGACGT
TTAAAGACCCGAAAGTACACCGACAAAGACGGCATTGAGAAATACGCGACCGACATCGTGGCCAATGAAATGCAAATGTT
GGGTGGTCGTGAAGGCATGGGTGAGCCGTCAGGTAGTGATGAGGACTATGGCGGAGGCAATGCAGGCGGTGGCGGTGGCT
ATTCTCGGCCAGCGCAAGCCTCGCGACCGGTTGCTGCCGCACCCGCGGTGCGGCAAGTGCCGGCGCAAGCCCGTCCTGCT
AGTGGTTTTGACGACATGGATGATGACATTCCTTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria gonorrhoeae MS11

51.934

100

0.547
  ssb Neisseria meningitidis MC58

53.107

100

0.547
  ssb Vibrio cholerae strain A1552

48.913

100

0.523
  ssb Glaesserella parasuis strain SC1401

43.229

100

0.483