Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   J9319_RS11640 Genome accession   NZ_CP072851
Coordinates   2248815..2249108 (-) Length   97 a.a.
NCBI ID   WP_008342186.1    Uniprot ID   A0A5K1NAM4
Organism   Bacillus altitudinis strain 6ww6     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2243815..2254108
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J9319_RS11590 (J9319_11590) sinR 2243980..2244315 (+) 336 WP_017357978.1 helix-turn-helix domain-containing protein Regulator
  J9319_RS11595 (J9319_11595) - 2244383..2245183 (-) 801 WP_008342195.1 TasA family protein -
  J9319_RS11600 (J9319_11600) - 2245242..2245814 (-) 573 WP_017357979.1 signal peptidase I -
  J9319_RS11605 (J9319_11605) tapA 2245864..2246391 (-) 528 WP_116307132.1 amyloid fiber anchoring/assembly protein TapA -
  J9319_RS11610 (J9319_11610) - 2246644..2246970 (+) 327 WP_083561443.1 DUF3889 domain-containing protein -
  J9319_RS11615 (J9319_11615) - 2247004..2247198 (-) 195 WP_034319624.1 YqzE family protein -
  J9319_RS11620 (J9319_11620) comGG 2247259..2247642 (-) 384 WP_116307134.1 competence type IV pilus minor pilin ComGG -
  J9319_RS11625 (J9319_11625) comGF 2247639..2248136 (-) 498 WP_116307136.1 competence type IV pilus minor pilin ComGF -
  J9319_RS11630 (J9319_11630) comGE 2248078..2248392 (-) 315 WP_081114339.1 competence type IV pilus minor pilin ComGE -
  J9319_RS11635 (J9319_11635) comGD 2248376..2248822 (-) 447 WP_116307138.1 competence type IV pilus minor pilin ComGD -
  J9319_RS11640 (J9319_11640) comGC 2248815..2249108 (-) 294 WP_008342186.1 competence type IV pilus major pilin ComGC Machinery gene
  J9319_RS11645 (J9319_11645) comGB 2249125..2250165 (-) 1041 WP_116307140.1 competence type IV pilus assembly protein ComGB -
  J9319_RS11650 (J9319_11650) comGA 2250146..2251216 (-) 1071 WP_017357987.1 competence type IV pilus ATPase ComGA Machinery gene
  J9319_RS11655 (J9319_11655) - 2251682..2252554 (-) 873 WP_116307142.1 STAS domain-containing protein -
  J9319_RS11665 (J9319_11665) - 2252780..2253160 (-) 381 WP_007501232.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  J9319_RS11670 (J9319_11670) - 2253373..2253615 (+) 243 WP_003217440.1 DUF2626 domain-containing protein -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10728.62 Da        Isoelectric Point: 6.7081

>NTDB_id=556380 J9319_RS11640 WP_008342186.1 2248815..2249108(-) (comGC) [Bacillus altitudinis strain 6ww6]
MNDKGFTLLEMLIVMLVISILLLITIPNITRHHQSIQAKGCEGLKSMVSTQVMAYELEHDGKTPSLAELEKEGYVKKGLT
CPNGKAIFIQNGDVKNE

Nucleotide


Download         Length: 294 bp        

>NTDB_id=556380 J9319_RS11640 WP_008342186.1 2248815..2249108(-) (comGC) [Bacillus altitudinis strain 6ww6]
ATGAATGATAAAGGATTTACACTGTTAGAAATGTTAATTGTCATGCTTGTGATCTCCATTCTTTTATTGATTACCATTCC
AAATATCACTCGGCATCATCAAAGCATTCAAGCAAAGGGCTGTGAAGGGCTGAAATCAATGGTGAGTACACAGGTAATGG
CATATGAATTAGAGCATGATGGCAAGACGCCATCTTTAGCTGAATTAGAAAAAGAAGGCTATGTCAAAAAGGGATTAACT
TGTCCGAATGGAAAGGCAATTTTCATTCAAAATGGGGATGTGAAAAATGAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NAM4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

67.01

100

0.67
  comGC Staphylococcus aureus MW2

41.304

94.845

0.392
  comGC Staphylococcus aureus N315

41.304

94.845

0.392