Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   J9319_RS11590 Genome accession   NZ_CP072851
Coordinates   2243980..2244315 (+) Length   111 a.a.
NCBI ID   WP_017357978.1    Uniprot ID   -
Organism   Bacillus altitudinis strain 6ww6     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2238980..2249315
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J9319_RS11570 (J9319_11570) gcvT 2239456..2240553 (-) 1098 WP_116307130.1 glycine cleavage system aminomethyltransferase GcvT -
  J9319_RS11575 (J9319_11575) - 2241115..2242785 (+) 1671 WP_008342199.1 SNF2-related protein -
  J9319_RS11580 (J9319_11580) - 2242800..2243597 (+) 798 WP_017367588.1 YqhG family protein -
  J9319_RS11585 (J9319_11585) - 2243782..2243946 (+) 165 WP_008342197.1 anti-repressor SinI family protein -
  J9319_RS11590 (J9319_11590) sinR 2243980..2244315 (+) 336 WP_017357978.1 helix-turn-helix domain-containing protein Regulator
  J9319_RS11595 (J9319_11595) - 2244383..2245183 (-) 801 WP_008342195.1 TasA family protein -
  J9319_RS11600 (J9319_11600) - 2245242..2245814 (-) 573 WP_017357979.1 signal peptidase I -
  J9319_RS11605 (J9319_11605) tapA 2245864..2246391 (-) 528 WP_116307132.1 amyloid fiber anchoring/assembly protein TapA -
  J9319_RS11610 (J9319_11610) - 2246644..2246970 (+) 327 WP_083561443.1 DUF3889 domain-containing protein -
  J9319_RS11615 (J9319_11615) - 2247004..2247198 (-) 195 WP_034319624.1 YqzE family protein -
  J9319_RS11620 (J9319_11620) comGG 2247259..2247642 (-) 384 WP_116307134.1 competence type IV pilus minor pilin ComGG -
  J9319_RS11625 (J9319_11625) comGF 2247639..2248136 (-) 498 WP_116307136.1 competence type IV pilus minor pilin ComGF -
  J9319_RS11630 (J9319_11630) comGE 2248078..2248392 (-) 315 WP_081114339.1 competence type IV pilus minor pilin ComGE -
  J9319_RS11635 (J9319_11635) comGD 2248376..2248822 (-) 447 WP_116307138.1 competence type IV pilus minor pilin ComGD -
  J9319_RS11640 (J9319_11640) comGC 2248815..2249108 (-) 294 WP_008342186.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12936.47 Da        Isoelectric Point: 4.8062

>NTDB_id=556379 J9319_RS11590 WP_017357978.1 2243980..2244315(+) (sinR) [Bacillus altitudinis strain 6ww6]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNENDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWKKKQEEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=556379 J9319_RS11590 WP_017357978.1 2243980..2244315(+) (sinR) [Bacillus altitudinis strain 6ww6]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTAAACGAAAATGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAAAAAAAA
GCAAGAAGAGGAGTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

92.793

100

0.928